PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02668-augustus-gene-0.19-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 764aa MW: 88588.2 Da PI: 10.0136 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 1e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v ++G g+W+++a+ g++R++k+c++rw +yl maker-scaffold02668-augustus-gene-0.19-mRNA-1 16 KGPWTPEEDKLLSEYVSLHGEGRWSSVASSAGLNRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++ +G++ W+tIar+++ gRt++++k++w+++ maker-scaffold02668-augustus-gene-0.19-mRNA-1 69 RGQLTPQEEGIIIELHAIWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113 7888******************.*********.************97 PP | |||||||
3 | Myb_DNA-binding | 52.4 | 1.2e-16 | 250 | 297 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++vk++G g+W+ +++ g++R++k+c++rw +yl maker-scaffold02668-augustus-gene-0.19-mRNA-1 250 KGSWTPEEDRLLSEYVKLHGEGRWNCVSKSTGLNRSGKSCRLRWVNYL 297 799*******************************************97 PP | |||||||
4 | Myb_DNA-binding | 44 | 5e-14 | 304 | 347 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T+ E+ + v+ ++++G++ W+tIar+++ gRt++++k++w+++ maker-scaffold02668-augustus-gene-0.19-mRNA-1 304 GQLTPLEEGIVVEMHALWGNR-WSTIARYLP-GRTDNEIKNYWRTH 347 667999***************.*********.************97 PP | |||||||
5 | Myb_DNA-binding | 43.7 | 6.6e-14 | 466 | 509 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T+ E+ + v+ ++++G++ W+tIar+++ gRt++++k++w+++ maker-scaffold02668-augustus-gene-0.19-mRNA-1 466 GQLTPLEEGIVVEMHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 509 667999***************.*********.************97 PP | |||||||
6 | Myb_DNA-binding | 44.9 | 2.7e-14 | 567 | 610 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+eEd l ++vk++G g+W++++r g++R +k+c++r+ maker-scaffold02668-augustus-gene-0.19-mRNA-1 567 KGPWTPEEDRLVGEYVKLHGEGRWSSVSRSTGLNRNGKSCRLRY 610 79*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.537 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.81E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.869 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-8 | 73 | 114 | No hit | No description |
PROSITE profile | PS51294 | 22.521 | 245 | 301 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 246 | 300 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.91E-28 | 248 | 344 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 249 | 299 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-16 | 250 | 297 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-9 | 252 | 297 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 301 | 351 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.567 | 302 | 352 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-12 | 302 | 350 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-11 | 303 | 347 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-7 | 307 | 348 | No hit | No description |
SMART | SM00717 | 84 | 351 | 461 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.762 | 427 | 459 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 442 | 458 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.12E-19 | 445 | 516 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 459 | 513 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.724 | 460 | 514 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-12 | 464 | 512 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-11 | 465 | 509 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-7 | 469 | 510 | No hit | No description |
PROSITE profile | PS51294 | 18.247 | 562 | 631 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-14 | 563 | 610 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 566 | 629 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-12 | 567 | 611 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.11E-14 | 567 | 628 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-9 | 569 | 627 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-6 | 611 | 642 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MATMIGWGMQ EQGWRKGPWT PEEDKLLSEY VSLHGEGRWS SVASSAGLNR SGKSCRLRWV 60 NYLRPGLKRG QLTPQEEGII IELHAIWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKEKS 120 SQKQEKRKQQ ILKLKQQQQQ LQIQLKQQQQ VQQPQEHDIK TVFSQAETST EEMSETHGIR 180 QQMVPKNPNS EDQCMPKMYQ DFASWFDTIG DDGLPSGLWN FADDYTVAWM RQVLKGKKPK 240 FSISDDGWTK GSWTPEEDRL LSEYVKLHGE GRWNCVSKST GLNRSGKSCR LRWVNYLRPG 300 LKKGQLTPLE EGIVVEMHAL WGNRWSTIAR YLPGRTDNEI KNYWRTHFKK KGKSSKKQDM 360 EKAQTLKQKQ PPKKQEQEPH EDSIKRETIS NEDTSGDQMS SEVRVGMGQN CGDHNSCMLT 420 RPSTISYGVI KWLIGKMTTP KLGLNRSGKS CRLRWVNYLR PGLKKGQLTP LEEGIVVEMH 480 ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKKGKSSKQQ DMKKAPTLKQ TQPPKKQGQE 540 PKEDSIKFYI ILAWKMGWGI PEQGWRKGPW TPEEDRLVGE YVKLHGEGRW SSVSRSTGLN 600 RNGKSCRLRY LPGRTDNEIK NYWRTHFKKK GKSSKKQDME KAQTLKQTQP PKKQEQEPKE 660 DSMKREAISD EDTSDEQMSS EAQGTQEMFV IKENPTSEDQ CFSAMSQDVA SWLETVREDD 720 FCFSLWNLDD PKGDMNHDHQ PTGFSCGIDS RNFYNNGDFI LKKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 16 | 513 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP855464 | 3e-82 | KP855464.1 Quercus variabilis microsatellite Qv1424 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892765.1 | 1e-132 | transcription factor MYB57-like | ||||
Swissprot | Q9LX82 | 5e-47 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2N9HT60 | 1e-115 | A0A2N9HT60_FAGSY; Uncharacterized protein | ||||
STRING | XP_010113169.1 | 4e-85 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-58 | myb domain protein 121 |
Publications ? help Back to Top | |||
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