PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02668-augustus-gene-0.19-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 764aa    MW: 88588.2 Da    PI: 10.0136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02668-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-181663148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT+eEd+ll ++v ++G g+W+++a+  g++R++k+c++rw +yl
  maker-scaffold02668-augustus-gene-0.19-mRNA-1 16 KGPWTPEEDKLLSEYVSLHGEGRWSSVASSAGLNRSGKSCRLRWVNYL 63
                                                   79********************************************97 PP

2Myb_DNA-binding49.31.1e-1569113147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    rg  T++E+ +++++++ +G++ W+tIar+++ gRt++++k++w+++
  maker-scaffold02668-augustus-gene-0.19-mRNA-1  69 RGQLTPQEEGIIIELHAIWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113
                                                    7888******************.*********.************97 PP

3Myb_DNA-binding52.41.2e-16250297148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    +g+WT+eEd ll ++vk++G g+W+ +++  g++R++k+c++rw +yl
  maker-scaffold02668-augustus-gene-0.19-mRNA-1 250 KGSWTPEEDRLLSEYVKLHGEGRWNCVSKSTGLNRSGKSCRLRWVNYL 297
                                                    799*******************************************97 PP

4Myb_DNA-binding445e-14304347247
                                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    g  T+ E+ + v+ ++++G++ W+tIar+++ gRt++++k++w+++
  maker-scaffold02668-augustus-gene-0.19-mRNA-1 304 GQLTPLEEGIVVEMHALWGNR-WSTIARYLP-GRTDNEIKNYWRTH 347
                                                    667999***************.*********.************97 PP

5Myb_DNA-binding43.76.6e-14466509247
                                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    g  T+ E+ + v+ ++++G++ W+tIar+++ gRt++++k++w+++
  maker-scaffold02668-augustus-gene-0.19-mRNA-1 466 GQLTPLEEGIVVEMHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 509
                                                    667999***************.*********.************97 PP

6Myb_DNA-binding44.92.7e-14567610144
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                                    +g+WT+eEd l  ++vk++G g+W++++r  g++R +k+c++r+
  maker-scaffold02668-augustus-gene-0.19-mRNA-1 567 KGPWTPEEDRLVGEYVKLHGEGRWSSVSRSTGLNRNGKSCRLRY 610
                                                    79*****************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5371163IPR017930Myb domain
SuperFamilySSF466897.81E-3113110IPR009057Homeodomain-like
SMARTSM007176.7E-171565IPR001005SANT/Myb domain
PfamPF002493.0E-181663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231770IPR009057Homeodomain-like
CDDcd001671.05E-101863No hitNo description
PROSITE profilePS5129424.86964118IPR017930Myb domain
SMARTSM007171.9E-1368116IPR001005SANT/Myb domain
PfamPF002492.1E-1369113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2371117IPR009057Homeodomain-like
CDDcd001671.25E-873114No hitNo description
PROSITE profilePS5129422.521245301IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-20246300IPR009057Homeodomain-like
SuperFamilySSF466893.91E-28248344IPR009057Homeodomain-like
SMARTSM007171.2E-14249299IPR001005SANT/Myb domain
PfamPF002494.8E-16250297IPR001005SANT/Myb domain
CDDcd001671.04E-9252297No hitNo description
Gene3DG3DSA:1.10.10.603.6E-21301351IPR009057Homeodomain-like
PROSITE profilePS5129417.567302352IPR017930Myb domain
SMARTSM007172.9E-12302350IPR001005SANT/Myb domain
PfamPF002491.5E-11303347IPR001005SANT/Myb domain
CDDcd001671.03E-7307348No hitNo description
SMARTSM0071784351461IPR001005SANT/Myb domain
PROSITE profilePS500904.762427459IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4442458IPR009057Homeodomain-like
SuperFamilySSF466891.12E-19445516IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-21459513IPR009057Homeodomain-like
PROSITE profilePS5129421.724460514IPR017930Myb domain
SMARTSM007178.4E-12464512IPR001005SANT/Myb domain
PfamPF002491.8E-11465509IPR001005SANT/Myb domain
CDDcd001672.37E-7469510No hitNo description
PROSITE profilePS5129418.247562631IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-14563610IPR009057Homeodomain-like
SMARTSM007171.2E-12566629IPR001005SANT/Myb domain
PfamPF002492.9E-12567611IPR001005SANT/Myb domain
SuperFamilySSF466891.11E-14567628IPR009057Homeodomain-like
CDDcd001671.58E-9569627No hitNo description
Gene3DG3DSA:1.10.10.607.1E-6611642IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MATMIGWGMQ EQGWRKGPWT PEEDKLLSEY VSLHGEGRWS SVASSAGLNR SGKSCRLRWV  60
NYLRPGLKRG QLTPQEEGII IELHAIWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKEKS  120
SQKQEKRKQQ ILKLKQQQQQ LQIQLKQQQQ VQQPQEHDIK TVFSQAETST EEMSETHGIR  180
QQMVPKNPNS EDQCMPKMYQ DFASWFDTIG DDGLPSGLWN FADDYTVAWM RQVLKGKKPK  240
FSISDDGWTK GSWTPEEDRL LSEYVKLHGE GRWNCVSKST GLNRSGKSCR LRWVNYLRPG  300
LKKGQLTPLE EGIVVEMHAL WGNRWSTIAR YLPGRTDNEI KNYWRTHFKK KGKSSKKQDM  360
EKAQTLKQKQ PPKKQEQEPH EDSIKRETIS NEDTSGDQMS SEVRVGMGQN CGDHNSCMLT  420
RPSTISYGVI KWLIGKMTTP KLGLNRSGKS CRLRWVNYLR PGLKKGQLTP LEEGIVVEMH  480
ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKKGKSSKQQ DMKKAPTLKQ TQPPKKQGQE  540
PKEDSIKFYI ILAWKMGWGI PEQGWRKGPW TPEEDRLVGE YVKLHGEGRW SSVSRSTGLN  600
RNGKSCRLRY LPGRTDNEIK NYWRTHFKKK GKSSKKQDME KAQTLKQTQP PKKQEQEPKE  660
DSMKREAISD EDTSDEQMSS EAQGTQEMFV IKENPTSEDQ CFSAMSQDVA SWLETVREDD  720
FCFSLWNLDD PKGDMNHDHQ PTGFSCGIDS RNFYNNGDFI LKKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23165136107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8554643e-82KP855464.1 Quercus variabilis microsatellite Qv1424 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892765.11e-132transcription factor MYB57-like
SwissprotQ9LX825e-47MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2N9HT601e-115A0A2N9HT60_FAGSY; Uncharacterized protein
STRINGXP_010113169.14e-85(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-58myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]