PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02593-augustus-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 295aa    MW: 31139.5 Da    PI: 9.5273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02593-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063558225
                                                   -S---SGGGGTS--TTTTT-SS-S CS
                                        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                                   k ++C  f+ t  C++G++C+F H
  maker-scaffold02593-augustus-gene-0.19-mRNA-1 35 KSKPCTKFFSTAGCPFGESCHFLH 58
                                                   7789******************** PP
2zf-CCCH28.62.5e-09100124226
                                                    -S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                                    kt+lC+ +     Ck+Gd+C+FaH 
  maker-scaffold02593-augustus-gene-0.19-mRNA-1 100 KTRLCNKYNTAEGCKFGDKCHFAHN 124
                                                    8***********************7 PP
3zf-CCCH34.33.9e-11262286126
                                                    --S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                                    ykt+lC +f + G C +G+rC+FaHg
  maker-scaffold02593-augustus-gene-0.19-mRNA-1 262 YKTKLCENFTK-GSCTFGERCHFAHG 286
                                                    9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-63459IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-83558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-1497129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-897129IPR000571Zinc finger, CCCH-type
SMARTSM003560.002198125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15998126IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-16163239IPR004088K Homology domain, type 1
SMARTSM003222.7E-14167237IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.2E-17167238IPR004088K Homology domain, type 1
PROSITE profilePS5008414.99168232IPR004088K Homology domain, type 1
PfamPF000131.3E-12170233IPR004088K Homology domain, type 1
CDDcd001053.19E-16170232No hitNo description
Gene3DG3DSA:4.10.1000.107.9E-17257292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-8260291IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577261288IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDTRKRGRPE AAFNANGGFK KSKQEMDSLS GVGSKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNAVAQM MNLAPAVPAA TRNMSGPPPA IPNGSTPAVK TRLCNKYNTA EGCKFGDKCH  120
FAHNEWELGK PIAPSHEDPR AMGPPMPGRM GARAEPHPPV PASSFGASAT AKISVDASLA  180
GAIIGKGGVN SKQICRQTGA KLSIRDHESD PNLRNIELEG TFEQIKEASA MVRQLIETVS  240
LSGPPKSHGM MPGAAAPPGS NYKTKLCENF TKGSCTFGER CHFAHGAAEL RKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805967.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-114C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4DFQ70.0A0A2I4DFQ7_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGVIT_08s0007g06400.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-61C3H family protein