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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02444-snap-gene-0.25-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bZIP | ||||||||
Protein Properties | Length: 200aa MW: 21342.7 Da PI: 6.2873 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.1 | 3.9e-08 | 174 | 196 | 4 | 26 |
XCHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka 26 +++rr++kNRe+A rsR+RK+ maker-scaffold02444-snap-gene-0.25-mRNA-1 174 QQKQRRMIKNRESAARSRERKQH 196 689******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-6 | 166 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 178 | 193 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MLADLQRQQQ QNQSMNMDDL LKNLYSTSSD QFTEGTTSAA RVGGDKTVDE VWKELVTGTA 60 GTNADNRSKL EEISGDNGNN TAEEMILEDF LTRAGAVREE DVRLDGGGAL VPVAGGYGIN 120 GGGVGGQFGM EVENHWRIVL GGGVSAVPVP VSVVGGGGDG GGKGKKKVLD KATQQKQRRM 180 IKNRESAARS RERKQHLFHN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023895501.1 | 6e-55 | bZIP transcription factor 12-like | ||||
TrEMBL | A0A2I4GE24 | 1e-34 | A0A2I4GE24_JUGRE; ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
STRING | XP_009615514.1 | 2e-32 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.2 | 6e-10 | abscisic acid responsive elements-binding factor 2 |