PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02342-augustus-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 324aa    MW: 35609.9 Da    PI: 5.4327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02342-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000411912291255
                                                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  maker-scaffold02342-augustus-gene-0.19-mRNA-1 191 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 229
                                                    6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.268179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-7189237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-10189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.97E-6189233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMAGNPNWWS MPPPSLLPPQ YALGSSSLPF NPLAAENQEL PQSWSQLLLG GLPASDEESF  60
RLSHFQPKKL ENWEEQILNQ SQRVLPVNVD VIKQEISQNS NLYGLEDHEE FQALPRPAAW  120
SQQIMPVSSP RSCVTSLSNN NILDFSYKKM DGSNQNLDQS SESTSSATGG AYKKARVQPS  180
STSSQPPLKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE AIGYIRFLQG QIEALSSPYF  240
GNASKNMRSQ QSVQGERNGV FPEDPGQLLN DACLKRKEAP NQDTQDKPRD LKSRGLCLVP  300
VSCTQLVGSD NGADFWAPAY GGGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929330.10.0transcription factor bHLH68-like isoform X2
SwissprotQ8S3D11e-73BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2I4DDF11e-152A0A2I4DDF1_JUGRE; transcription factor bHLH68-like isoform X3
STRINGXP_002516005.11e-152(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.16e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]