PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02338-snap-gene-0.27-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 302aa    MW: 34276.6 Da    PI: 5.7555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02338-snap-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-071572143
                                               TSSS-HHHHHHHHHHHHHT...TTT........-HHHHHHHHT....TTS-HHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkql...Ggg........tWktIartmg....kgRtlkqcksr 43
                                               r rWT+ +d++++d+v ++   G++        tW++I ++++    ++   +q++ +
  maker-scaffold02338-snap-gene-0.27-mRNA-1 15 RTRWTPSLDKIFADLVVKHiqlGNRpnnvfdkkTWNLIREEFNnqtdLNFNNNQLRKH 72
                                               78*************9765222777******************665555555666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127766.1E-151797IPR024752Myb/SANT-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSEASHQPK LERSRTRWTP SLDKIFADLV VKHIQLGNRP NNVFDKKTWN LIREEFNNQT  60
DLNFNNNQLR KHLDVLRTRF YNLKSALDQN NDFALDDSCC IGFDLWEDIG AQPRPEMVKV  120
KDCPIYEQLC AIFTDSAAEG KYAQSSHYEE LDKSVGIDTA GLNSCQDGGT PLSANPSSLK  180
PVQGIMSSAE RTMKNNVEKK RKRPSETHPS LGQSRRDQEI QNAMAEAMFE MVAALKSRAV  240
AKAPSDERFT ITNCIRALDE IQGIDEPLYF AALDLFEDPN LRETFISLKG NNIRLTWLQG  300
KC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913286.10.0L10-interacting MYB domain-containing protein-like isoform X1
TrEMBLA0A2N9EDI60.0A0A2N9EDI6_FAGSY; Uncharacterized protein
STRINGXP_008364935.11e-163(Malus domestica)