PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02338-snap-gene-0.27-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 302aa MW: 34276.6 Da PI: 5.7555 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.8e-07 | 15 | 72 | 1 | 43 |
TSSS-HHHHHHHHHHHHHT...TTT........-HHHHHHHHT....TTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkql...Ggg........tWktIartmg....kgRtlkqcksr 43 r rWT+ +d++++d+v ++ G++ tW++I ++++ ++ +q++ + maker-scaffold02338-snap-gene-0.27-mRNA-1 15 RTRWTPSLDKIFADLVVKHiqlGNRpnnvfdkkTWNLIREEFNnqtdLNFNNNQLRKH 72 78*************9765222777******************665555555666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12776 | 6.1E-15 | 17 | 97 | IPR024752 | Myb/SANT-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDSEASHQPK LERSRTRWTP SLDKIFADLV VKHIQLGNRP NNVFDKKTWN LIREEFNNQT 60 DLNFNNNQLR KHLDVLRTRF YNLKSALDQN NDFALDDSCC IGFDLWEDIG AQPRPEMVKV 120 KDCPIYEQLC AIFTDSAAEG KYAQSSHYEE LDKSVGIDTA GLNSCQDGGT PLSANPSSLK 180 PVQGIMSSAE RTMKNNVEKK RKRPSETHPS LGQSRRDQEI QNAMAEAMFE MVAALKSRAV 240 AKAPSDERFT ITNCIRALDE IQGIDEPLYF AALDLFEDPN LRETFISLKG NNIRLTWLQG 300 KC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913286.1 | 0.0 | L10-interacting MYB domain-containing protein-like isoform X1 | ||||
TrEMBL | A0A2N9EDI6 | 0.0 | A0A2N9EDI6_FAGSY; Uncharacterized protein | ||||
STRING | XP_008364935.1 | 1e-163 | (Malus domestica) |