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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02294-augustus-gene-0.23-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 115aa MW: 12879.9 Da PI: 8.3875 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.5 | 3.4e-36 | 6 | 106 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvye 64 +CaaC lrr+C kdCvlapyfp ++p++fa+vhk+FGasn++k+l++lp + r a+ ++ +e maker-scaffold02294-augustus-gene-0.23-mRNA-1 6 RCAACESLRRRCRKDCVLAPYFPPTNPQRFACVHKIFGASNITKMLEQLPLHLRAVAAVCMSFE 69 6*************************************************************** PP DUF260 65 AearardPvyGavgvilklqqqleqlkaelallkeel 101 A r++d vyG+vg+i++lq+q+ ++++el+++k+e+ maker-scaffold02294-augustus-gene-0.23-mRNA-1 70 ASSRVEDSVYGSVGIISQLQEQIIEAQSELVKTKNEI 106 ********************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.8 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-35 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MSHSTRCAAC ESLRRRCRKD CVLAPYFPPT NPQRFACVHK IFGASNITKM LEQLPLHLRA 60 VAAVCMSFEA SSRVEDSVYG SVGIISQLQE QIIEAQSELV KTKNEIAFHN AQQQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 7 | 106 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 7 | 106 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892503.1 | 3e-70 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-42 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2K1YZY8 | 8e-58 | A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010278070.1 | 9e-55 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-44 | LOB domain-containing protein 24 |