PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02218-augustus-gene-0.33-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB

Protein Properties

Length: 207aa MW: 23856.6 Da PI: 10.0484

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02218-augustus-gene-0.33-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ ++k +G g+W++I++ g+ R++k+c++rw +yl maker-scaffold02218-augustus-gene-0.33-mRNA-1 14 KGTWTREEDQRLIAYIKAHGEGCWRSIPKAAGLLRCGKSCRLRWINYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	55.7	1.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eEd+l+++++ +lG++ W+ Ia++++ gRt++++k++w+++l maker-scaffold02218-augustus-gene-0.33-mRNA-1 67 RGNFTNEEDDLIIKLHGLLGNR-WSMIAARLP-GRTDNEIKNYWNSHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.365	9	61	IPR017930	Myb domain
SMART	SM00717	1.1E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.24E-30	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.42E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.382	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGRSPCCDKS HTNKGTWTRE EDQRLIAYIK AHGEGCWRSI PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TNEEDDLIIK LHGLLGNRWS MIAARLPGRT DNEIKNYWNS HLRRKLLSRG 120 IDPLTHKPIS TDTNKGEKFM DGFGCKIEKS PDEKSLTELN LELRIGPPNQ HPPLPLERKE 180 KKVCFYCSLG LENNKAMIMR EEKKTGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-31	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924034.1	1e-135	myb-related protein 308-like
Swissprot	P81393	3e-88	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2N9J474	1e-108	A0A2N9J474_FAGSY; Uncharacterized protein
STRING	POPTR_0005s11410.1	6e-99	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	6e-87	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]