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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02209-augustus-gene-0.43-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | GRAS | ||||||||
Protein Properties | Length: 604aa MW: 68000.8 Da PI: 6.7057 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 173.4 | 1.7e-53 | 291 | 469 | 4 | 181 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67 lL++cA+av+s+d++ ++lL+++++++sp gd qRla+yf++AL+arla++ +y l+++ maker-scaffold02209-augustus-gene-0.43-mRNA-1 291 LLTQCAQAVASSDQKTSNELLNQIRQHSSPLGDRYQRLAHYFANALEARLAGTRIPIYTPLESN 354 79**************************************************888999877777 PP GRAS 68 etseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLl 129 ts +++ l+a++ f v+P+ ++s++ aN++I + +e +++HiiDf+i +GlQWp+L+ maker-scaffold02209-augustus-gene-0.43-mRNA-1 355 GTS---VANYLKAYQPFKTVCPFKRMSNFFANRTIRKLAEARkaTTLHIIDFGILYGLQWPCLI 415 776...9****************************999887755889***************** PP GRAS 130 qaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 q L+ Rp+gp ++R+Tg++ p++g +e++eetg+rL++++++++vpfe+n++ maker-scaffold02209-augustus-gene-0.43-mRNA-1 416 QRLSIRPGGPLKFRVTGIELPQPGfrPAERVEETGRRLENYCKRINVPFEYNAI 469 ***********************9****************************96 PP | |||||||
2 | GRAS | 59.6 | 6.4e-19 | 469 | 550 | 210 | 291 |
GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 + +++de+++++ +rd vL+l+k+++P+++v+ + +n++ Fl+rf eal +ysalfd+l+a maker-scaffold02209-augustus-gene-0.43-mRNA-1 469 IAHIPDETMAINCPRDIVLNLIKRINPDLFVHGVVNGAYNAPFFLTRFREALFFYSALFDMLDA 532 57899*********************************************************** PP GRAS 274 klpreseerikvErellg 291 ++pre+++r +E+e +g maker-scaffold02209-augustus-gene-0.43-mRNA-1 533 TMPREDHQRLQLEKERIG 550 *************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.36 | 262 | 604 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-51 | 291 | 469 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MDNLLEYNHE FVPDPFLPNN TQHPVDSSPS IGTSLGGEPS YTSDPSALLE YMNEMLMEED 60 LEARPCMLQD GLALQAAEKS FYEVLGQGDH PLTNQDNECP YALVAGNSRT HVSNSYYVAD 120 NLIKSNWSHD QGESNSFCIQ TSLIDSQSEN LLLPDSFSET HSFAQVKGGM GIAVESIRHG 180 NMKSLIWKAS HQCLQSTPGR EDTDNLEEGR SSKHSLVDAG EVDFELLEKL DKILRCPAGD 240 SESASSALHK SGGYGGRKKL QHNNHSKGSH GKTMLPKHEG KKRVVVDFWG LLTQCAQAVA 300 SSDQKTSNEL LNQIRQHSSP LGDRYQRLAH YFANALEARL AGTRIPIYTP LESNGTSVAN 360 YLKAYQPFKT VCPFKRMSNF FANRTIRKLA EARKATTLHI IDFGILYGLQ WPCLIQRLSI 420 RPGGPLKFRV TGIELPQPGF RPAERVEETG RRLENYCKRI NVPFEYNAIA HIPDETMAIN 480 CPRDIVLNLI KRINPDLFVH GVVNGAYNAP FFLTRFREAL FFYSALFDML DATMPREDHQ 540 RLQLEKERIG GCYERNSDEE AVLLAKKAVE SEYHKDFVIY KDGQWMLQGW KGRIIYASSC 600 WKPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-37 | 294 | 549 | 25 | 296 | Protein SCARECROW |
5b3h_A | 4e-37 | 294 | 549 | 24 | 295 | Protein SCARECROW |
5b3h_D | 4e-37 | 294 | 549 | 24 | 295 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023897036.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2N9G687 | 0.0 | A0A2N9G687_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_002718m | 1e-179 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-123 | GRAS family protein |