PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02166-snap-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 778aa    MW: 85393.2 Da    PI: 7.1834
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02166-snap-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-094755072254
                                                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                ++yp+ +++  LAk++gLt +qV++WF N R +
  maker-scaffold02166-snap-gene-0.23-mRNA-1 475 HPYPKDSDKVVLAKQTGLTRSQVSNWFINARVR 507
                                                89*****************************88 PP
2BELL121.24.6e-39332403172
                                       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdai 68 
                                                +rqelq+kk+kL+++l+eV++rY+qy++q+++v+ssFe++aglgsa++Yt+lAl++iS++FrcLkd i
  maker-scaffold02166-snap-gene-0.23-mRNA-1 332 QRQELQMKKTKLVTMLDEVEQRYRQYHHQMHIVVSSFEQAAGLGSARSYTALALQTISKQFRCLKDTI 399
                                                69****************************************************************** PP

                                       BELL  69 aeqi 72 
                                                ++qi
  maker-scaffold02166-snap-gene-0.23-mRNA-1 400 SSQI 403
                                                ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-62261401IPR006563POX domain
PfamPF075263.6E-49266400IPR006563POX domain
PROSITE profilePS5007111.774448511IPR001356Homeobox domain
CDDcd000861.39E-11451512No hitNo description
SMARTSM003893.6E-9451515IPR001356Homeobox domain
SuperFamilySSF466891.63E-16452517IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27454517IPR009057Homeodomain-like
PfamPF059202.7E-17468507IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MIDSQRDRLT CAQMYPLPRS VRSAVSHSVR TTHMYKKRKE DSLCSFIEIK SMATYFHSEI  60
QANTGSDGLH TLYLMNPNPN SNYVPYSDTQ NQHSAPNILF LNPAASITNA LNPSTLSHAP  120
PQNQHLVGIP LAANNSDDPS RQSLLGQQEI PALHAISAPR VHYNLWGPLM DPAASVTVAS  180
SSGSGPEMGF RGLGPSLNQQ QQQGLSLSLS SQQTAFYNNR SVLSAGGGSG GGEHDFPSSG  240
EDLRVSGNSP SSVSAVSNGI SGVQSVILGS KYLKAAQELL DDVVNVGNEI KVDSMEGNKD  300
KMKMNKESTA VIGDDPGESS GAKQGAELST AQRQELQMKK TKLVTMLDEV EQRYRQYHHQ  360
MHIVVSSFEQ AAGLGSARSY TALALQTISK QFRCLKDTIS SQIKATSKSL GEDQDCLGVK  420
TEGGSRLKYV DQQLRQQRAL QQLGMLQHNA WRPQRGLPER AVSVLRAWLF DHFLHPYPKD  480
SDKVVLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYLEE IKEHERNDSE DNINKRESNK  540
EGSTTIAPAD STAATRLDQM KALQSKAENF TNQMASDPNE ISNSSSLSKS SVGGSIQAHN  600
SSGFHLVGLS DMERSPKKPR SISEFQKYSP NNLLSMDMEM KPEETSREIS TSFGSDQRQA  660
KDDYSLISGT HGGGFGAYPI GDIGRFNPEQ LSQRFHGNAV SLTLGLPHCE NLSLSGTQQS  720
YLTHQNIHMG RRLEMGTGET DFCGINTPQP SHSNTGYDNI DIQNRKRFAA QLLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15457515563Homeobox protein Meis2
3k2a_B1e-15457515563Homeobox protein Meis2
4xrs_A9e-16457514158Homeobox protein Meis1
4xrs_B9e-16457514158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875523.10.0BEL1-like homeodomain protein 1 isoform X1
TrEMBLA0A2N9G7G60.0A0A2N9G7G6_FAGSY; Uncharacterized protein
STRINGVIT_06s0009g00410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-114BEL1-like homeodomain 1