PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02164-snap-gene-0.14-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 67aa    MW: 7771.73 Da    PI: 10.1095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02164-snap-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0818571554
                                               HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                        HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                               +i +  ++Lr+l+P+ + + +s K+s + +L+++++YI+sL
  maker-scaffold02164-snap-gene-0.14-mRNA-1 18 QIIDLVSKLRQLVPEiQ-NRRSDKVSASKVLQETCNYIRSL 57
                                               5667779********76.99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.147357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-81661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-81766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-61857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MSSRRSRQSG ASRITDDQII DLVSKLRQLV PEIQNRRSDK VSASKVLQET CNYIRSLHRE  60
VDDLSER
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311287e-50KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886648.12e-40transcription factor PRE6-like
SwissprotQ9LJX13e-30PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2I4FW893e-36A0A2I4FW89_JUGRE; transcription factor PRE6-like
STRINGGLYMA09G37370.17e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.19e-27bHLH family protein