PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02162-snap-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 398aa    MW: 43023.2 Da    PI: 5.7161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02162-snap-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-173984147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                               +g+W++eEd  l ++v q+G ++W++Iar ++ gR++k+c++rw + 
  maker-scaffold02162-snap-gene-0.25-mRNA-1 39 KGPWSPEEDAVLSRLVSQFGARNWSLIARGIP-GRSGKSCRLRWCNQ 84
                                               79******************************.***********985 PP
2Myb_DNA-binding58.91.2e-1891135147
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                r+++T eEde++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  maker-scaffold02162-snap-gene-0.25-mRNA-1  91 RKPFTDEEDEIILKAHAVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 135
                                                789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3893485IPR017930Myb domain
SuperFamilySSF466894.87E-3136132IPR009057Homeodomain-like
SMARTSM007176.0E-153887IPR001005SANT/Myb domain
PfamPF002491.9E-163984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-274092IPR009057Homeodomain-like
CDDcd001672.20E-144183No hitNo description
PROSITE profilePS5129425.86586140IPR017930Myb domain
SMARTSM007177.8E-1890138IPR001005SANT/Myb domain
PfamPF002491.9E-1691135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2493139IPR009057Homeodomain-like
CDDcd001671.18E-1393136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSEKVEDHSP AAECGAESGD PELVASEGIG GGGGGGKVKG PWSPEEDAVL SRLVSQFGAR  60
NWSLIARGIP GRSGKSCRLR WCNQLDPCLK RKPFTDEEDE IILKAHAVHG NKWAAIAKLL  120
PGRTDNAIKN HWNSTLRRRG ADLGMWKMED SSLDRAKVSS EETLSVGVIN SFSPPEGGDV  180
PMEDSPHPCE DKAQTNEEHF VAEEREHPTL SRPVARVSAF NVYNPPGGTS SSVFSRTVPT  240
QGPLVQASKP ELGVCKFLQD VYSEPMVPLQ CGHGCCTDSR GGHSHSSLLG PEFVEYIEPP  300
SFSSHELISI ATDLNNIAWI KSGLEKNGVR MPDDAASHRV SEAVAAASQL GTFEHNMKKD  360
HMGVEEGHNK LMGMMKDVLS TQMPRQTFPG PAEVEGLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-39381396107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895370.10.0transcription factor MYB1-like
SwissprotQ425752e-95MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2N9IT690.0A0A2N9IT69_FAGSY; Uncharacterized protein
STRINGXP_008233695.11e-176(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-104myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]