PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02162-snap-gene-0.25-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 398aa MW: 43023.2 Da PI: 5.7161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 39 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G ++W++Iar ++ gR++k+c++rw + maker-scaffold02162-snap-gene-0.25-mRNA-1 39 KGPWSPEEDAVLSRLVSQFGARNWSLIARGIP-GRSGKSCRLRWCNQ 84 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.2e-18 | 91 | 135 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEde++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ maker-scaffold02162-snap-gene-0.25-mRNA-1 91 RKPFTDEEDEIILKAHAVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 135 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.389 | 34 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 36 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-15 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 39 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-27 | 40 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-14 | 41 | 83 | No hit | No description |
PROSITE profile | PS51294 | 25.865 | 86 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-18 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 91 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 93 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-13 | 93 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MSEKVEDHSP AAECGAESGD PELVASEGIG GGGGGGKVKG PWSPEEDAVL SRLVSQFGAR 60 NWSLIARGIP GRSGKSCRLR WCNQLDPCLK RKPFTDEEDE IILKAHAVHG NKWAAIAKLL 120 PGRTDNAIKN HWNSTLRRRG ADLGMWKMED SSLDRAKVSS EETLSVGVIN SFSPPEGGDV 180 PMEDSPHPCE DKAQTNEEHF VAEEREHPTL SRPVARVSAF NVYNPPGGTS SSVFSRTVPT 240 QGPLVQASKP ELGVCKFLQD VYSEPMVPLQ CGHGCCTDSR GGHSHSSLLG PEFVEYIEPP 300 SFSSHELISI ATDLNNIAWI KSGLEKNGVR MPDDAASHRV SEAVAAASQL GTFEHNMKKD 360 HMGVEEGHNK LMGMMKDVLS TQMPRQTFPG PAEVEGLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-39 | 38 | 139 | 6 | 107 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023895370.1 | 0.0 | transcription factor MYB1-like | ||||
Swissprot | Q42575 | 2e-95 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A2N9IT69 | 0.0 | A0A2N9IT69_FAGSY; Uncharacterized protein | ||||
STRING | XP_008233695.1 | 1e-176 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-104 | myb domain protein 109 |
Publications ? help Back to Top | |||
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