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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold02141-snap-gene-0.26-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 453aa MW: 51166.2 Da PI: 10.0754 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold02141-snap-gene-0.26-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 54.5 | 2.1e-17 | 167 | 264 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHH CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWk 66
ff+v +++++++ grl ++ +fa+++ k++ +++l ++ W++++++r ++ + + +GWk
maker-scaffold02141-snap-gene-0.26-mRNA-1 167 FFTVVMQPSYFQDGRLNISCNFANKYLRKTN--NDIILWVSDEGNWSIRVRFRESRTGtrAEFCRGWK 232
8999**********************65544..4788888889999999988555555336777**** PP
HHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
B3 67 eFvkangLkegDfvvFkldgr.sefelvvkvfr 98
F ++n+Lk+gD++vF+l+++ + ++v +f+
maker-scaffold02141-snap-gene-0.26-mRNA-1 233 AFTEDNNLKVGDVCVFELINSiE-VAFKVAIFQ 264
******************98844.447777776 PP
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2 | B3 | 46.6 | 6.3e-15 | 345 | 449 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTE.E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgr.y 59
f ++ ps+ +g + +p+ f+ ++ ++ k +++ + + W vkl+ + g+ y
maker-scaffold02141-snap-gene-0.26-mRNA-1 345 FMVTMRPSYLCGKGHMHVPRGFM-NYlpkegfikEYAKGI-ARIVMLQVADQLWPVKLSSYICAGAaY 410
67788999999999999*****9.6679998886444444.47999999*********776666667* PP
EE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE CS
B3 60 vltkGWkeFvkangLkegDfvvFkld.grsefelvvkvf 97
+++GW+ Fv++n L++gD++vF+l+ r++ ++v++f
maker-scaffold02141-snap-gene-0.26-mRNA-1 411 QFSSGWSAFVRENTLQVGDVCVFELVmMRDDVVFKVHIF 449
************************873336666677776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 453 aa
Download sequence Send
to blast |
MELVYPSLLV CFRLSTSLAK KGCGTLTVQS HVKKNMKKKK TALANRWTWY YVTCSSHRVP 60 RKFISKYGGG LSNAAYLKLP HGAEWKVELT DGDGEGDPHF RAEVTKATGT ILEKSKMNAG 120 LPSKAEECSG TTRCLKLEVI EKMQPLSASV KDRALYRARV FESRNPFFTV VMQPSYFQDG 180 RLNISCNFAN KYLRKTNNDI ILWVSDEGNW SIRVRFRESR TGTRAEFCRG WKAFTEDNNL 240 KVGDVCVFEL INSIEVAFKV AIFQAGKDID CPVLNVSTHV GGGNRGPKSD CSLDDYPSKE 300 GGRGRSTSQR CLKVKAFQKK KELNIKGRAR TIERARAFKS QNPFFMVTMR PSYLCGKGHM 360 HVPRGFMNYL PKEGFIKEYA KGIARIVMLQ VADQLWPVKL SSYICAGAAY QFSSGWSAFV 420 RENTLQVGDV CVFELVMMRD DVVFKVHIFK CPE
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 1e-21 | 142 | 453 | 23 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-21 | 142 | 453 | 23 | 146 | B3 domain-containing transcription factor VRN1 |