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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold02114-augustus-gene-0.15-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
MYB |
Protein Properties |
Length: 255aa MW: 29262.9 Da PI: 7.052 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold02114-augustus-gene-0.15-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed++l ++v+ +G g+W + +++ g++R++k c++rw++yl
maker-scaffold02114-augustus-gene-0.15-mRNA-1 14 KGAWTAQEDKILTEYVRIHGEGQWGKLPKRAGLKRCGKGCRLRWLNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 53.1 | 7.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
maker-scaffold02114-augustus-gene-0.15-mRNA-1 67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111
7899******************.*********.***********976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MGRRPCCSKE GLNKGAWTAQ EDKILTEYVR IHGEGQWGKL PKRAGLKRCG KGCRLRWLNY 60 LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLSRKVHDNK 120 CATPTPSGQS TEDKSKIDLQ VVQTNAINNK NDHFDTKDSW LSVDCDHTFN DKSLEFDMYH 180 GLSSFANGSD NIQSSDFMKD FNMEELCFSD LLISPYLPDS RVFECSNGYD NGLSPSLEKC 240 LIFSNEMLRD WSFIQ
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB434610 | 4e-49 | AB434610.1 Fagus crenata FcMYBD5 mRNA for transcription factor MYBD5, partial cds. |