PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02082-snap-gene-0.21-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB

Protein Properties

Length: 265aa MW: 30154.3 Da PI: 8.0444

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02082-snap-gene-0.21-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d vk +G g W+ a++ g++R++k+c++rw +yl maker-scaffold02082-snap-gene-0.21-mRNA-1 14 KGAWTALEDKILIDHVKTHGEGKWSNLAKETGLKRCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	46	1.2e-14	67	147	1	48
TSSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..................................tWktIartmgkg 34 rg+ +++E+el+ +++k+lG++ +W++Ia +++ g maker-scaffold02082-snap-gene-0.21-mRNA-1 67 RGNISQDEEELIMRLHKLLGNRrkvlklsfmcdtknnnnvdalvkvlilklkkcycRWSLIAGRLP-G 133 7899*************************************************************. PP S-HHHHHHHHHHHT CS Myb_DNA-binding 35 Rtlkqcksrwqkyl 48 Rt++++k++w++yl maker-scaffold02082-snap-gene-0.21-mRNA-1 134 RTDNEIKNYWNSYL 147 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-23	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.481	9	65	IPR017930	Myb domain
SMART	SM00717	1.9E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-14	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.87E-22	14	65	IPR009057	Homeodomain-like
CDD	cd00167	4.54E-11	16	61	No hit	No description
PROSITE profile	PS50090	8.931	62	147	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.7E-20	65	87	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-9	66	149	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-11	67	147	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.87E-22	119	146	IPR009057	Homeodomain-like
CDD	cd00167	9.49E-6	123	147	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.7E-20	123	150	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGRNPRCTKD GLNKGAWTAL EDKILIDHVK THGEGKWSNL AKETGLKRCG KSCRLRWMNY 60 LRPDIKRGNI SQDEEELIMR LHKLLGNRRK VLKLSFMCDT KNNNNVDALV KVLILKLKKC 120 YCRWSLIAGR LPGRTDNEIK NYWNSYLAKK TQIQIPSPKS RTDQKKPTIR EENMSDFILD 180 LSSDDFCKML DSDFAKLSDV DINELHNIAI EGDEGSLLVL SEGTENNGRE SGQPNNSNKV 240 SDFQSLFLDS GDGWLGDDLD IAFSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-23	12	151	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023905630.1	3e-89	transcription factor TT2-like isoform X1
TrEMBL	A0A2N9GR02	2e-98	A0A2N9GR02_FAGSY; Uncharacterized protein
STRING	POPTR_0006s29080.1	1e-61	(Populus trichocarpa)
STRING	XP_010047392.1	9e-62	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-50	myb domain protein 3