PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02013-snap-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 227aa    MW: 25572.8 Da    PI: 8.4644
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02013-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-13161213354
                                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
                                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkk 54 
                                                + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN  L k+++e+ k+
  maker-scaffold02013-snap-gene-0.18-mRNA-1 161 AQQRQRRMIKNRESAARSRERKQAYQNELESLAVRLEEENGLLlKDKAEKTKE 213
                                                679*************************************8541445555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-11156219No hitNo description
SMARTSM003381.6E-8159221IPR004827Basic-leucine zipper domain
PfamPF001709.9E-12161218IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.117161213IPR004827Basic-leucine zipper domain
CDDcd147079.42E-15163209No hitNo description
SuperFamilySSF579597.63E-9164207No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MASSKVMTRK SDLPTTPRSS SSSSSSSSLS SPTKSLDQTT TTTTTTTDSS LLLDAQITLI  60
ETPNPIPISK TVDEVWRQIV SGERKVCKQE QHDDEMMTLE DFLVKAGAVQ DQDENEEDVK  120
MKKEERLGGD SILAFPHNNN KNGSARVGKR PRVLEPLDKA AQQRQRRMIK NRESAARSRE  180
RKQAYQNELE SLAVRLEEEN GLLLKDKAEK TKERFKQIME KVIPVVE
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908113.11e-131G-box-binding factor 4-like
SwissprotP427773e-42GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A2I4GW962e-66A0A2I4GW96_JUGRE; G-box-binding factor 4 isoform X1
STRINGXP_006473064.19e-60(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-47bZIP family protein