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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01995-augustus-gene-0.29-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | E2F/DP | ||||||||
Protein Properties | Length: 345aa MW: 38354.9 Da PI: 5.9578 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.3 | 1.1e-27 | 92 | 174 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYD 48 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD maker-scaffold01995-augustus-gene-0.29-mRNA-1 92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnsvtspdqqqyDEKNIRRRVYD 152 689********...*****999****************************************** PP E2F_TDP 49 ilNVLealnliekkekneirwkg 71 +lNVL+a+++i+k +k+ei+wkg maker-scaffold01995-augustus-gene-0.29-mRNA-1 153 ALNVLMAMDIISK-DKKEIQWKG 174 *************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 3.4E-136 | 3 | 345 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 8.8E-47 | 87 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.9E-35 | 91 | 174 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.0E-25 | 93 | 174 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.11E-22 | 94 | 175 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 4.93E-44 | 179 | 282 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.4E-43 | 180 | 291 | No hit | No description |
SMART | SM01138 | 5.0E-76 | 181 | 343 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 5.5E-42 | 182 | 313 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGTRSQQLSR EEEEEDPPGR GATTISGQSV STSRSVGSPS SRSEQTMATP ASDSTFLRLN 60 HLDIQGDDAG SQGAVASKKK KRGQRAVGGD KSGRGLRQFS MKVCEKVESK GRTTYNEVAD 120 ELVAEFADPS NSVTSPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTSL 180 NDIEELKTER LGLRNRIEKK AAYLQELEEQ FVGLQNLIQR NEQLYSSGNA PSGGVALPFI 240 LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCERPQV DDMAHNFTAD 300 GGEGSSMSNM YQTQIPLPPM SNTTIRPPTS PPLPGILKAR VKHEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-39 | 85 | 179 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023888274.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_023888275.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_023888276.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_023888277.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_023888278.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_023888279.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-170 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A2I4ECM4 | 0.0 | A0A2I4ECM4_JUGRE; transcription factor-like protein DPB isoform X1 | ||||
STRING | XP_004137174.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-160 | Transcription factor DP |