PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01995-augustus-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family E2F/DP
Protein Properties Length: 345aa    MW: 38354.9 Da    PI: 5.9578
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01995-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2792174271
                                        E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYD 48 
                                                    ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD
  maker-scaffold01995-augustus-gene-0.29-mRNA-1  92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnsvtspdqqqyDEKNIRRRVYD 152
                                                    689********...*****999****************************************** PP

                                        E2F_TDP  49 ilNVLealnliekkekneirwkg 71 
                                                    +lNVL+a+++i+k +k+ei+wkg
  maker-scaffold01995-augustus-gene-0.29-mRNA-1 153 ALNVLMAMDIISK-DKKEIQWKG 174
                                                    *************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.4E-1363345IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.8E-4787179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.9E-3591174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-2593174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.11E-2294175IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.93E-44179282IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-43180291No hitNo description
SMARTSM011385.0E-76181343IPR014889Transcription factor DP, C-terminal
PfamPF087815.5E-42182313IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGTRSQQLSR EEEEEDPPGR GATTISGQSV STSRSVGSPS SRSEQTMATP ASDSTFLRLN  60
HLDIQGDDAG SQGAVASKKK KRGQRAVGGD KSGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFADPS NSVTSPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTSL  180
NDIEELKTER LGLRNRIEKK AAYLQELEEQ FVGLQNLIQR NEQLYSSGNA PSGGVALPFI  240
LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCERPQV DDMAHNFTAD  300
GGEGSSMSNM YQTQIPLPPM SNTTIRPPTS PPLPGILKAR VKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3985179193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888274.10.0transcription factor-like protein DPB isoform X1
RefseqXP_023888275.10.0transcription factor-like protein DPB isoform X1
RefseqXP_023888276.10.0transcription factor-like protein DPB isoform X1
RefseqXP_023888277.10.0transcription factor-like protein DPB isoform X1
RefseqXP_023888278.10.0transcription factor-like protein DPB isoform X1
RefseqXP_023888279.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-170DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2I4ECM40.0A0A2I4ECM4_JUGRE; transcription factor-like protein DPB isoform X1
STRINGXP_004137174.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-160Transcription factor DP