PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01951-augustus-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 470aa    MW: 50541.4 Da    PI: 8.5451
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01951-augustus-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.1e-115377226
                                                   -S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                                   + ++C +++rtG+C yG+rC+++H+
  maker-scaffold01951-augustus-gene-0.34-mRNA-1 53 GVPNCVYYMRTGFCGYGSRCRYNHP 77
                                                   6899********************8 PP
2zf-CCCH40.15.9e-1397123127
                                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                                    ++++ C+++++tGtCk+G++CkF+H++
  maker-scaffold01951-augustus-gene-0.34-mRNA-1  97 PGEPACQYYLKTGTCKFGASCKFHHPK 123
                                                    57899********************96 PP
3zf-CCCH36.21e-11144169227
                                                    -S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                                    ++++C+++++tG+Ck+G +CkF+H++
  maker-scaffold01951-augustus-gene-0.34-mRNA-1 144 GEKECSYYLKTGHCKFGLTCKFHHPQ 169
                                                    7899********************97 PP
4zf-CCCH36.48.8e-12300326127
                                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                                    ++++ C++++rtG Ck+G++C+++H++
  maker-scaffold01951-augustus-gene-0.34-mRNA-1 300 PGEPQCQYYMRTGDCKFGSSCRYHHPR 326
                                                    57899********************96 PP
5zf-CCCH28.72.3e-09349370627
                                                    -SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                                                    C f++++G+Ck+G++CkF H++
  maker-scaffold01951-augustus-gene-0.34-mRNA-1 349 CAFYMQNGHCKFGSTCKFDHPM 370
                                                    99******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-65178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6575179IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-85377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-55777IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.06196124IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-796123IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1098123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5102122IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001148168IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.647299327IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6303328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4305326IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671343371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6346373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4348370IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7349370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MELYGRNSAR NGSQSGQQQQ QPEWTPSGTE TGLEESMWHL GLRGSESYPE RQGVPNCVYY  60
MRTGFCGYGS RCRYNHPHDR AAVAEAVRAT GEYPERPGEP ACQYYLKTGT CKFGASCKFH  120
HPKDGGGSLS QAPPNSYGYP LRPGEKECSY YLKTGHCKFG LTCKFHHPQP AGTSMPASAP  180
QFYPPVQSPS LPTPDQYGGA STSLRVPRPP LIPSSFVQGT YGPLLLPPGV VPIQSWNPYS  240
APLSPVLSPG AQPAVGPTPL YGVTPLSSST PALARPYPSF PSSADPSSSN QNQQSFPERP  300
GEPQCQYYMR TGDCKFGSSC RYHHPRDRVV PSTVLSPNGL PLRPGIQHCA FYMQNGHCKF  360
GSTCKFDHPM EAYSPSASSL IDIPIAPYTV GSLLATVAPS SSSSELRPEL ISGSYPTRMP  420
SSGNTSSSVG LIFSQTGSVS LSEVQHSSQI SSPLSGGRNT RQGGEVRRSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907577.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2I4GIT20.0A0A2I4GIT2_JUGRE; zinc finger CCCH domain-containing protein 32-like
STRINGEOX949710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein