PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01867-augustus-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 469aa    MW: 52259.4 Da    PI: 8.4831
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01867-augustus-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.61.4e-41179256178
                                                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS
                                            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 
                                                    +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v v gle+rfCqqCsrfh lsefDe+krsCrr
  maker-scaffold01867-augustus-gene-0.30-mRNA-1 179 RCQVEGCNLDLSSAKDYHRKHRVCESHSKSPMVNVGGLERRFCQQCSRFHGLSEFDEKKRSCRR 242
                                                    6*************************************************************** PP

                                                    TTT-------S--- CS
                                            SBP  65 rLakhnerrrkkqa 78 
                                                    rL++hn+rrrk+q+
  maker-scaffold01867-augustus-gene-0.30-mRNA-1 243 RLSDHNARRRKPQP 256
                                                    ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-34175241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.915177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-39178259IPR004333Transcription factor, SBP-box
PfamPF031107.7E-32180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEWNEKSPSQ WEWENLFMFN AKATENSKLQ EIEWGMQGDQ GINSGSFYSS AGGEGSDGSG  60
PELGHASPSK SSKSASINSS SMGESKPSKL TFEAFGGFPN DLSNKKELAK VEPKRISRTL  120
EPSSGCGEPL LSLKLGKQMY FEDACAGSNT ETSTFSMIPM PSVTIAKKCK TSFPSTTPRC  180
QVEGCNLDLS SAKDYHRKHR VCESHSKSPM VNVGGLERRF CQQCSRFHGL SEFDEKKRSC  240
RRRLSDHNAR RRKPQPEAVR LNPARLPSSL YDGKQQMSLL FNKGPLAYSR AAGFTWEDIC  300
SSKINQTKEY PLKVAKARDS DIQLHLPSNE MPRSINTLCH DSSRLLPSKG TIAEALNPGL  360
GEPMMSTDLD ASQDFRRALS LLSTNSWDSR ESKPARHPHS NHTSQSNMPQ PLMHAMTQGL  420
PHTSSEHRRT EQQSTESQVH ILSSPNNGSS HFQEFQLFKE PYEFGFYSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-271802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926742.10.0squamosa promoter-binding-like protein 10
RefseqXP_023926743.10.0squamosa promoter-binding-like protein 10
TrEMBLA0A2N9HET00.0A0A2N9HET0_FAGSY; Uncharacterized protein
STRINGVIT_01s0010g03710.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-66squamosa promoter binding protein-like 2