PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01846-augustus-gene-0.45-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 991aa    MW: 108481 Da    PI: 5.6256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01846-augustus-gene-0.45-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.42.1e-203076148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+W++eEde ++++vk++G++ W+tIa++++ gR +kqc++rw+++l
  maker-scaffold01846-augustus-gene-0.45-mRNA-1 30 KGPWSKEEDEVIIELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 76
                                                   79******************************.*************97 PP
2Myb_DNA-binding48.71.8e-1582124145
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                                    + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  maker-scaffold01846-augustus-gene-0.45-mRNA-1  82 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 124
                                                    579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.054124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-10636IPR009057Homeodomain-like
PROSITE profilePS5129434.1212580IPR017930Myb domain
SuperFamilySSF466891.01E-3127123IPR009057Homeodomain-like
SMARTSM007173.2E-192978IPR001005SANT/Myb domain
PfamPF002491.4E-183076IPR001005SANT/Myb domain
CDDcd001674.57E-173276No hitNo description
Gene3DG3DSA:1.10.10.601.3E-273783IPR009057Homeodomain-like
PROSITE profilePS5129419.56381131IPR017930Myb domain
SMARTSM007172.2E-1581129IPR001005SANT/Myb domain
PfamPF002491.7E-1382125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2184131IPR009057Homeodomain-like
CDDcd001674.47E-1284124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MLIGAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEV IIELVKKYGP KKWSTIAQHL  60
PGRIGKQCRE RWHNHLNPSI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK  120
NHWNSSVKKK LDSYLASGLL AHYPVLPHVG HRNQSMLTSS SRMQSSGDDS GLKGMEGEEI  180
SECSQDSTVA GCFQSASEMA NAVLHNIEEL PLTQESGLAK EQNSSPLSCS EQYYTSLEDV  240
AFSMPDISCE AGCPDKLLEQ NFSHGAGTSV SRENKFNVHG LPNISSLELG QDSSQLQTHC  300
ISTNESHEMV NVPCQASTSM GYMAMGSYNK AEHMLIPDDE CCRVLFSEAM NDGNFFTGNL  360
TKGSNMIAPV GGTDSFRCQS SSSMISETVA TSASQSYCPP RSDIIGTSCS QHFVPAPSLI  420
SVDGGTLIYS DEPNQLFETQ EQEFVISAHD GFVYTKDSPN SPCNNGTKNT GLQEQPDFVK  480
EPSKLVPVNS FGSGSDIKHT CPSLGEGPHV HTEQLDVGAL CYEPPRFPSL DIPFFSCDLV  540
QSGSDMQQQE YSPLGIRQLM MSSMNCLTPF RLWDSPSRDD SPDAVLKSAA KTFTGTPSIL  600
KKRHRDLLSP LSDRRIDKKL EIDMTSSLAR DFSRLDVLFA DSGTQKGPLL SPSSNRKRNS  660
GTSTDDKENI DHAFEEGDEG AAHICHGGDW WIKLKFVQYS HYVYLCVFSL TNFYLFLVQQ  720
SSGVLVEHDM NNLLLHSPDQ VGSKADTALL GSSAGTPRNQ QSRSLGAASN QGILNKSSFA  780
NPCAPVSSPT VCGKKHESHS VAVTCLQSAS FSVPLENRSD NAGNDASLET SGIFGGTPFK  840
RSIESPSAWK SPWFINSFLP GPRVDTDITI EDIGYFMSPG DRSYDAIGLM KQISEQSAAA  900
YANAQEVLGN ETPKTLLKGK SISQGNLDRE NSHMPHDPLG NRSHLAPNVL TECRILDFSE  960
CGTPAKGTEN GRSSNALSFS SPSSYLLKGC R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-64513133159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-64513133159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295991e-111KP229599.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB43) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903491.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_023903492.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A2N9J4J10.0A0A2N9J4J1_FAGSY; Uncharacterized protein
STRINGEMJ265960.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein