PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01801-augustus-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 364aa    MW: 41355.5 Da    PI: 8.6318
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01801-augustus-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-1658106148
                                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                                    +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  maker-scaffold01801-augustus-gene-0.22-mRNA-1  58 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 106
                                                    79*********************************************97 PP
2Myb_DNA-binding40.37.5e-13113155246
                                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    g ++ eEd ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  maker-scaffold01801-augustus-gene-0.22-mRNA-1 113 GEFSDEEDRIICNLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 155
                                                    789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.78853106IPR017930Myb domain
SuperFamilySSF466891.25E-2755153IPR009057Homeodomain-like
SMARTSM007174.3E-1357108IPR001005SANT/Myb domain
PfamPF002497.8E-1658106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2559113IPR009057Homeodomain-like
CDDcd001677.07E-1060106No hitNo description
PROSITE profilePS5129422.583107161IPR017930Myb domain
SMARTSM007172.2E-12111159IPR001005SANT/Myb domain
PfamPF002492.1E-11113155IPR001005SANT/Myb domain
CDDcd001679.12E-9114157No hitNo description
Gene3DG3DSA:1.10.10.601.9E-23114161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
NQSSFSKTLG SLKRLEDIQE IIRLLHRERQ TPTKRERERE RERVMGRAPC CDKANVKKGP  60
WSPEEDSKLK EYIEKYGTGG NWIALPQKAG LKRCGKSCRL RWLNYLRPNI KHGEFSDEED  120
RIICNLFASI GSRWSIIAAQ LPGRTDNDIK NYWNTKLKKK LMGMLPPSQR KPPPFPSSYQ  180
APPFQSQPLS YKECSLSCYS PTTTKSFSGL ESMSVPLNFS NTTTSLATNN PSSLFQTQES  240
WLSSMQYYPV KENLLMFGSE GSTCSSSDGS CTQISYGREV KQEEMGFQSY ISNGLEENQK  300
FMLNYGSNSI GGQNVANGYF GEIPLDYGIE DVKQLISNST NCSNSLLNNI DENKTQEKVT  360
YFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26581617108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8559602e-78KP855960.1 Quercus variabilis microsatellite Qv1920 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911785.10.0transcription factor RAX2-like
TrEMBLA0A2N9EYF90.0A0A2N9EYF9_FAGSY; Uncharacterized protein
STRINGEOY342871e-143(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-74myb domain protein 36