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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01800-snap-gene-0.38-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | CPP | ||||||||
Protein Properties | Length: 765aa MW: 83357.1 Da PI: 5.6477 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.7 | 8.5e-17 | 472 | 508 | 4 | 40 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++CnCkkskClk+YCeCfaag++C e C+C+dC+Nk maker-scaffold01800-snap-gene-0.38-mRNA-1 472 QRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 508 79*********************************96 PP | |||||||
2 | TCR | 50.7 | 3.7e-16 | 555 | 593 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs C+Ce+CkN maker-scaffold01800-snap-gene-0.38-mRNA-1 555 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 593 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.9E-17 | 469 | 510 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.726 | 470 | 595 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-12 | 472 | 507 | IPR005172 | CRC domain |
SMART | SM01114 | 8.3E-17 | 555 | 596 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.6E-11 | 557 | 593 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MDTPERNQIG TPISKFEDSP VFNYINSLSP IKPVKSIHIT QTFNPLNFSS LPSVFTSPHV 60 NSHKESRLKR HNCSDPSKPE FSSENGNKAC TNEGIGVDAT QLYDNAAELQ DNFDSGVSDR 120 EASVEPSSEH SKFAIELPRT LKYDCGSPVC DPTPCCGTEA GCMPTSLVQC GQEASAKGSP 180 EGEVHLSEMC RTDQTKEGLE CDWESLISDC PDILIFNSPN DSEAFKGLIQ KSVEPLTRFC 240 SSLMSQLPRN EFNDEHKMQI VDPVDSGELE TEDLSAKPGE ASELEEIDQL QNNPADTVLY 300 KGMSSNASEK LDNEVGMYMP HGSKAVTILH RGMRRRCLDF EMVGARRKNL GDGSNSGSSM 360 LSQSDENIAC HDNQLVPFKP GGDSSRCILP GIGLHLNALA TTSKDYKNVK HEDFSSGRQS 420 YLPSSTASLH SPSNSQEPFL QSLATASSER ETDHGENGAA PVEDASQASA YQRCNCKKSK 480 CLKLYCECFA AGVYCIEPCS CQDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRNSDSV 540 AEIGDESSKT PASARHKRGC NCKKSNCLKK YCECYQGGVG CSIGCRCEGC KNAFGRKDGS 600 APIGTEAELD EETEACENSA VDKVLQKHEI QNNEEQNPAS ALPMTPLRIS RPMVPLPFSS 660 NVKLSRASFI TMGSSSGLYT SQKLGKPSIL RSVPKFEKHF QTVPEDEMPE ILRGNCTPST 720 GVKSSSPNSK RVSPPQSDFG ASPSRRSGRK LILQSIPSFP SLTQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-17 | 474 | 592 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 6e-17 | 474 | 592 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023909383.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2I4EGY1 | 0.0 | A0A2I4EGY1_JUGRE; protein tesmin/TSO1-like CXC 2 isoform X3 | ||||
STRING | XP_008224266.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-162 | TESMIN/TSO1-like CXC 2 |