PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01795-snap-gene-0.38-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C3H | ||||||||
Protein Properties | Length: 862aa MW: 93329.2 Da PI: 5.1668 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.2 | 1.6e-09 | 92 | 119 | 1 | 27 |
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r C++Gd Ck+aHg+ maker-scaffold01795-snap-gene-0.38-mRNA-1 92 WKTSLCSYFRRDSgSCSHGDECKYAHGE 119 8**********877************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-13 | 89 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-7 | 89 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.46 | 91 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-7 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
CDD | cd00590 | 1.63E-4 | 191 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.70.330 | 4.1E-5 | 199 | 240 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 5.02E-6 | 199 | 250 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 47.509 | 306 | 862 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 1.12E-47 | 308 | 334 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.12E-47 | 366 | 469 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.12E-47 | 540 | 659 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 1.7E-61 | 557 | 659 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 4.8E-9 | 603 | 661 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 2.05E-6 | 605 | 659 | No hit | No description |
Pfam | PF05958 | 1.6E-6 | 746 | 797 | IPR010280 | (Uracil-5)-methyltransferase family |
Gene3D | G3DSA:3.40.50.150 | 1.7E-61 | 746 | 801 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.12E-47 | 749 | 802 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
PROSITE pattern | PS01230 | 0 | 757 | 789 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 1.7E-61 | 837 | 862 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.12E-47 | 846 | 862 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 862 aa Download sequence Send to blast |
MAASPNNELS PIETLNSPPS TPPQMDGHES TTTITTTATT TITTQSQLDS NQEPLSNPES 60 SAAALPPLPL PVPDDAVSGE KRKREEELPP LWKTSLCSYF RRDSGSCSHG DECKYAHGEE 120 ELRPRPDNTW DPTSDRAKKA MRSETTTTTT TKKKSEVCEA EIMMTEALID DDNNGGGGGC 180 LDPELSKCLG VQFKSVKKKK GMTVGFVTFE NTEQLKTAQE ELKGKSIGNK ILKVADVIPR 240 SFDKKIRSTM ALPLNGQQTG EPSLDGENTG VSISSNGVED GDTNDDEKHG STVDGSVASA 300 RSVRDVVTPL AHMPYSDQLE HKKTSLMQNL KKLTRNARKA CPHGVSLPEW ILKSREIGGL 360 SCKLEGILES PLVNGYRNKC EFSVGYSLQG KATVGFMLGN FREGVTAVEE PVDCPNVSRI 420 ACKYASIFQD FLQQSELPIW NRFKNIGFWR QLTVREGRTP GKVVDVENSD ASISEVMLIV 480 QVCSVGLDDA VVTGEFERLA QSFAAGAIAN SPSLPLTALV VQDHQGISNA APADAPLRQL 540 PIPKAASAKL ETNDVAEARI RDTISNLQFC ISPTAFFQVN TLAAEKLYSL AGDWAGLGPD 600 TLLFDVCCGT GTIGLTLAHR VGMVIGIEMN ASAVSDAYRN AEINGIKNCK FVCAKAEDVM 660 GSLLKEYLNV PQKPDEISNT SENSDKENAT AGEKDTSIDA VLDPEESSSH DLINNKSASG 720 CSENEEQEAG SQLQKNCTSE SGNTSVQQFK NVVAIVDPPR VGLHPIVIKA LRTHPRLRRL 780 VYISCNPESL VANAIELCTP SPESIEKGNK NNRGWRNMSG TGLARHRAKS MPPSEPFQPV 840 KAMAVDLFPH TVHCELVMLL ER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 3e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 3e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 3e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 3e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 3e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 4e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 3e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 3e-18 | 345 | 666 | 86 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023923876.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A2N9HWI4 | 0.0 | A0A2N9HWI4_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_001501m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8854 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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