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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold01789-snap-gene-0.35-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
NAC |
| Protein Properties |
Length: 303aa MW: 33817.8 Da PI: 6.506 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold01789-snap-gene-0.35-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 96.4 | 4.4e-30 | 19 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk......kvkaee 55
lppG+rFhP+++elv++yL++k ++ + + + i+e+++++++P +Lp + +++
maker-scaffold01789-snap-gene-0.35-mRNA-1 19 LPPGCRFHPSQHELVSYYLANKNRDPDpnpdenfSNGYDLIRELNLFDYDPFELPDdtcfsyGFGGRK 86
79*********************99986665554333458**************95467766555588 PP
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkge.ktdW 121
++wy +++++++ r++r+tk+gyWk gk ++v+ ++ +vg +k++vfy g++p++ +t+W
maker-scaffold01789-snap-gene-0.35-mRNA-1 87 RHWYCYCCSSSS---RIRSRRKTKNGYWKRNGKVRDVVGPcGRVQVGSRKSFVFYLGNSPETAfRTSW 151
8*******9886...4699*******************9978889**********998877655**** PP
NAM 122 vmheyrl 128
v+ ey+l
maker-scaffold01789-snap-gene-0.35-mRNA-1 152 VLYEYAL 158
*****87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MGDPIPSTQK LKPTTSFSLP PGCRFHPSQH ELVSYYLANK NRDPDPNPDE NFSNGYDLIR 60
ELNLFDYDPF ELPDDTCFSY GFGGRKRHWY CYCCSSSSRI RSRRKTKNGY WKRNGKVRDV 120
VGPCGRVQVG SRKSFVFYLG NSPETAFRTS WVLYEYALLD HPKASFVVCR VFSKSRAGNS 180
ISDNGLSSCA EESISAVRHI GTQHDGYLTS DTVEAKIQGD NSVDGNNEIP RYPKQLGSKL 240
EDQIMTGPVS VASLPFPSVM QPRELVSSTG LPGSGSMFVE GLTDQQLSSI LEEGFIELND 300
LMD
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-19 | 9 | 179 | 7 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 1e-19 | 9 | 179 | 7 | 170 | NAC domain-containing protein 19 |
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