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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01789-snap-gene-0.35-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 33817.8 Da PI: 6.506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.4 | 4.4e-30 | 19 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk......kvkaee 55 lppG+rFhP+++elv++yL++k ++ + + + i+e+++++++P +Lp + +++ maker-scaffold01789-snap-gene-0.35-mRNA-1 19 LPPGCRFHPSQHELVSYYLANKNRDPDpnpdenfSNGYDLIRELNLFDYDPFELPDdtcfsyGFGGRK 86 79*********************99986665554333458**************95467766555588 PP NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkge.ktdW 121 ++wy +++++++ r++r+tk+gyWk gk ++v+ ++ +vg +k++vfy g++p++ +t+W maker-scaffold01789-snap-gene-0.35-mRNA-1 87 RHWYCYCCSSSS---RIRSRRKTKNGYWKRNGKVRDVVGPcGRVQVGSRKSFVFYLGNSPETAfRTSW 151 8*******9886...4699*******************9978889**********998877655**** PP NAM 122 vmheyrl 128 v+ ey+l maker-scaffold01789-snap-gene-0.35-mRNA-1 152 VLYEYAL 158 *****87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-34 | 15 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.413 | 19 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-19 | 20 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGDPIPSTQK LKPTTSFSLP PGCRFHPSQH ELVSYYLANK NRDPDPNPDE NFSNGYDLIR 60 ELNLFDYDPF ELPDDTCFSY GFGGRKRHWY CYCCSSSSRI RSRRKTKNGY WKRNGKVRDV 120 VGPCGRVQVG SRKSFVFYLG NSPETAFRTS WVLYEYALLD HPKASFVVCR VFSKSRAGNS 180 ISDNGLSSCA EESISAVRHI GTQHDGYLTS DTVEAKIQGD NSVDGNNEIP RYPKQLGSKL 240 EDQIMTGPVS VASLPFPSVM QPRELVSSTG LPGSGSMFVE GLTDQQLSSI LEEGFIELND 300 LMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-19 | 9 | 179 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-19 | 9 | 180 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-19 | 9 | 179 | 7 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-19 | 9 | 179 | 7 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023881636.1 | 0.0 | NAC domain-containing protein 71-like | ||||
Refseq | XP_023881637.1 | 0.0 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A2N9IDY5 | 1e-119 | A0A2N9IDY5_FAGSY; Uncharacterized protein | ||||
STRING | EMJ25697 | 1e-105 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 9e-24 | NAC domain containing protein 38 |