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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01755-snap-gene-0.22-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ARF | ||||||||
Protein Properties | Length: 682aa MW: 75507.2 Da PI: 6.2984 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.6e-23 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvl 61 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g +W++++iyr++++r++l maker-scaffold01755-snap-gene-0.22-mRNA-1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGGVWKFRHIYRGTPRRHLL 189 89****************************985444444..8999*********************** PP -TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 62 tkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 t+GW++Fv+ ++L +gD++vF + +++ l+v+++r+ maker-scaffold01755-snap-gene-0.22-mRNA-1 190 TTGWSNFVNRKKLVAGDSIVFL--RAENGDLCVGIRRA 225 **********************..4488999****997 PP | |||||||
2 | Auxin_resp | 110.8 | 1.4e-36 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvs 67 aa+ a+++++FevvY+Prast+eF vk++ v++a+++++s GmRfkm fetedss++++ +Gt+++v+ maker-scaffold01755-snap-gene-0.22-mRNA-1 281 AATLATNGKPFEVVYYPRASTPEFFVKASVVRAAMEIHWSSGMRFKMPFETEDSSRISWfMGTISAVQ 348 68899*************************************************************** PP Auxin_resp 68 dldpvrWpnSkWrsLk 83 +dpvrWp+S+Wr+L+ maker-scaffold01755-snap-gene-0.22-mRNA-1 349 VADPVRWPDSPWRLLQ 364 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-29 | 113 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-36 | 118 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.00E-21 | 123 | 224 | No hit | No description |
Pfam | PF02362 | 3.9E-21 | 124 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-23 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.8E-32 | 281 | 364 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.115 | 600 | 675 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MITVMDSVKE IPMRNSDKSL DSQLWHACAG GMVQMPPINS KVFYFPQGHA EHALGGNVDF 60 GSSRIPSLIP CRVNTIRYLA DPESDEVYAK LKLVPLRNNE LDFEDDGFLG ASGIDQGQEK 120 LVSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYNAEPP VQTILAKDVH GGVWKFRHIY 180 RGTPRRHLLT TGWSNFVNRK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGIEYLSGWN 240 QEAANCGSTF GVYSSFMRES KNSSKPMELG GKVRNESVVE AATLATNGKP FEVVYYPRAS 300 TPEFFVKASV VRAAMEIHWS SGMRFKMPFE TEDSSRISWF MGTISAVQVA DPVRWPDSPW 360 RLLQVAWDEP DLLQNVKCVN PWLVELVSNI PVMHIPTFSP PRKKMRLPQQ ADYSLISQFP 420 MPSFSNNLLH TSSPFCGFSD NIPAGIQGAR HAQFGISSED LLHNNKMHSS LFPIGFQQLD 480 HAATPPRVPG GNFIDHAERN DASCLLTMGN TTRSLKENNE VKAPHIVLFG QLIFTEEQIS 540 KSCSGDTIGN SSSDMSPEKA ANFSDGSDSV LHQNVSLENS SDGGSPWYKD HRNNDLALEP 600 GHCKVFLESV DVGWTLDLSS LGSYEELYVK LAKMFRLESS QILLYQDALG AVKHTGEESF 660 SEFVKTARRL TVLTDSGSDN IE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-80 | 20 | 385 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023897376.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2N9F289 | 0.0 | A0A2N9F289_FAGSY; Auxin response factor | ||||
STRING | XP_006485698.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436433.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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