PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01734-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 237aa    MW: 26543.6 Da    PI: 6.4061
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01734-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like932.5e-29169223155
                                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                k+r++W+++LHe+Fv++v++LGG+ekAtPk+ilelm+ + Lt+ +vkSHLQkYR+
  maker-scaffold01734-snap-gene-0.30-mRNA-1 169 KKRIKWSQDLHEQFVKCVNRLGGAEKATPKAILELMDTNLLTIFNVKSHLQKYRI 223
                                                68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-26167225IPR009057Homeodomain-like
SuperFamilySSF466898.42E-15167224IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22169223IPR006447Myb domain, plants
PfamPF002493.4E-7173222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDDFSQQYCT EPPLITPALN DPFKSLVSAF HAAESYKEFQ EKYEHQVGNS RSASQFPTYD  60
SHILSSCQSS GDNNCSTDSA EQSSSNFDFK DSLQSLVKSH LCSICYCSSS EMSNMVPSNN  120
SSRPFPHDQN TLLCENADFV RRQILVPDHA NQALNVCQSS STRPAPSNKK RIKWSQDLHE  180
QFVKCVNRLG GAEKATPKAI LELMDTNLLT IFNVKSHLQK YRIAVHMPDY SVEGISC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-18169224156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-18169224156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-18169224156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-18169224156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-18169224257Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912134.11e-158myb family transcription factor PHL5-like, partial
TrEMBLA0A2N9EG855e-79A0A2N9EG85_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.24e-30G2-like family protein