PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

maker-scaffold01695-augustus-gene-0.23-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 317aa MW: 35153.9 Da PI: 4.9918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01695-augustus-gene-0.23-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00015	40	63	1	24
CHHHHHHHHHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLr 24 r++ + rE+ RRdr+N+ f eL maker-scaffold01695-augustus-gene-0.23-mRNA-1 40 RKVQKADREKLRRDRLNEQFLELG 63 5677889**************996 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDQWKTDNNN FTAELAPSTS APSNPRQSVD VEIKDPVAAR KVQKADREKL RRDRLNEQFL 60 ELGNTLDMLG LFVYDDHLLD TVQPVPISVD LTGEVNRLKV EYAALTEESR ELTQEKTELR 120 EEKASLKSDI ENLNVQYQQR LRVMFPWAAM DPSVVMGPPY SYPVPVPVPS GPIPMHPSLQ 180 PFPFFGNHTT GGIANPCSTF IPYPTPPNPP VEQPSAQYAS TSQISSKQDS KSKSSDHQRG 240 SNVERCDDSN DVATELELKM PGSSVQQDLS SEGRKGKQSQ RKERSATEVS SSSRYSSSQG 300 HQESSSNSVG DMPKSQN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924007.1	1e-171	transcription factor bHLH121-like
Swissprot	Q9LT23	1e-63	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2N9I7D0	1e-166	A0A2N9I7D0_FAGSY; Uncharacterized protein
STRING	XP_008336910.1	1e-146	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-48	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]