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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold01684-snap-gene-0.33-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
NAC |
| Protein Properties |
Length: 432aa MW: 48832.5 Da PI: 6.5786 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold01684-snap-gene-0.33-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.4 | 7.1e-50 | 18 | 174 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................... 49
lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp+
maker-scaffold01684-snap-gene-0.33-mRNA-1 18 LPPGFRFHPTDEELITFYLASKVFNGAFCG-VEIAEVDLNRCEPWELPEkrkreeklnvcvfsssllt 84
79*************************777.45**************95589**************** PP
NAM 50 ..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106
+k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l g+kktL
maker-scaffold01684-snap-gene-0.33-mRNA-1 85 cicwfvflidVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsSGALLGMKKTL 152
****9999986666999*************************************9978889******* PP
NAM 107 vfykgrapkgektdWvmheyrl 128
vfykgrap+gekt+Wvmheyrl
maker-scaffold01684-snap-gene-0.33-mRNA-1 153 VFYKGRAPRGEKTKWVMHEYRL 174
********************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010014 | Biological Process | meristem initiation |
| GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 432 aa
Download sequence Send
to blast |
MEDVLRELAG EEINERGLPP GFRFHPTDEE LITFYLASKV FNGAFCGVEI AEVDLNRCEP 60
WELPEKRKRE EKLNVCVFSS SLLTCICWFV FLIDVAKMGE REWYFFSLRD RKYPTGLRTN 120
RATGAGYWKA TGKDREVYSA SSGALLGMKK TLVFYKGRAP RGEKTKWVMH EYRLDGDFSY 180
RHTCKEEWVI CRIFHKAGEK KNSLFQGQSY LLEAASSPTS GSLPPLLETP TTTLLECQSQ 240
NSMQDLQNHF LINQQENDLK SLINPVVSQS HLFPINGFQV QPSLSPIPTT ITSSTTVATN 300
KNTDTTNNPS PSPLPSMLFK SLLSHQECTF KEHVTIQKQC KTEGNFSHFQ LPAEANLQWM 360
MDRTLPNTYQ NQNPLLFQID CGLLGLSALA SAPTTDATGH EMSTSIAFNR AGFQLMLDTP 420
MRIHGESWPL DA
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM448148 | 6e-82 | AM448148.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X222766.12, clone ENTAV 115. |
| Publications
? help Back to Top |
- Chen C, et al.
Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
J. Exp. Bot., 2014. 65(17): p. 4943-58
[PMID:24962999] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
Plant J., 2015. 83(4): p. 732-42
[PMID:26119568] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
Plant J., 2017. 90(3): p. 435-446
[PMID:28161901] - Espinosa-Ruiz A, et al.
TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
Development, 2017. 144(9): p. 1619-1628
[PMID:28320734] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549]
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