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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01657-snap-gene-0.23-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ARF | ||||||||
Protein Properties | Length: 748aa MW: 81322.7 Da PI: 6.1792 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 168 | 269 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvlt 62 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt maker-scaffold01657-snap-gene-0.23-mRNA-1 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLT 234 99****************************963.3445679*************************** PP TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +GW+ Fv+ ++L +gD v+F + +++el+++v+r+ maker-scaffold01657-snap-gene-0.23-mRNA-1 235 TGWSAFVNKKKLVSGDAVLFL--RGEDGELRLGVRRA 269 *********************..449999*****996 PP | |||||||
2 | Auxin_resp | 111 | 1.2e-36 | 294 | 376 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnP.rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvs 67 +++a+s +s+F+++YnP r s+seF+++++k++k+ ++++svGmRfkm+fe ed++err++G ++g+s maker-scaffold01657-snap-gene-0.23-mRNA-1 294 VVNAISLRSPFNIYYNPsRPSSSEFIIPLRKFLKSADHSFSVGMRFKMRFEAEDAAERRYTGFITGIS 361 6899*************66799********************************************** PP Auxin_resp 68 dldpvrWpnSkWrsL 82 d+dpv+Wp+SkWr+L maker-scaffold01657-snap-gene-0.23-mRNA-1 362 DADPVKWPGSKWRCL 376 **************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-40 | 159 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-43 | 161 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.94E-22 | 166 | 268 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 168 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-22 | 168 | 269 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-23 | 168 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-31 | 295 | 376 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MGLIDLNTME EDETPSSGTS STSSSSFSVA GLNTSGGSGS NLVVGAAAAA SSSSSSVCLE 60 LWHACAGPLI SLPKKGSVVV YFPQGQLEQL PDFSLAPAYT DDVPPHVFCR VLDVKLHAEE 120 GTDEVYAQVS LVPESEQFEQ KLQEGEVDVD GDEEDVEVAA NSSTPHMFCK TLTASDTSTH 180 GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGLEWRF RHIYRGQPRR HLLTTGWSAF 240 VNKKKLVSGD AVLFLRGEDG ELRLGVRRAV QVKGGATFSA LCSQQMNHSS LMEVVNAISL 300 RSPFNIYYNP SRPSSSEFII PLRKFLKSAD HSFSVGMRFK MRFEAEDAAE RRYTGFITGI 360 SDADPVKWPG SKWRCLLVRW DDIEARHNRV SPWEIEPSGS LSSSSSLMAS GSKRTRIGLP 420 SAKLEFPVPN GIGASDFGES SRFQKVLQGQ EILGFTHYDG IDTQNHHPSE TRRCFPGSNG 480 SVIAGTGDSV RNPVVNSDLS YKGTGFGESF QFRKVLQGQE IFPSSPYGRA PATNEAHDNG 540 GLGIFDGVQV LNSRKGWSTM MQGNNAHMRP SAPSMQVSSP SSVLMFQQAI NPVSNLSSVY 600 NFNNMEEQRI SNRNLLVSET IGGKLTPSAY SGLSFCKKDQ GGMNSSGFEH NQLGISLPPF 660 ANRSTFGGSQ DLVSSCKSSC RLFGFSLTEE KDVANTEDNP TPVSLSLNPG ASYLPTRWGT 720 VPSQASVDDT GNWKQLYQRT SAIVSQEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-114 | 54 | 404 | 16 | 361 | Auxin response factor 1 |
4ldy_B | 1e-114 | 54 | 404 | 16 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899806.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 3 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2N9G8C1 | 0.0 | A0A2N9G8C1_FAGSY; Auxin response factor | ||||
STRING | VIT_10s0003g00420.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |