PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01649-augustus-gene-0.27-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB

Protein Properties

Length: 258aa MW: 29363.6 Da PI: 5.9569

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01649-augustus-gene-0.27-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.5e-19	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll + ++++G g+W+++ar+ g++Rt+k+c++rw++yl maker-scaffold01649-augustus-gene-0.27-mRNA-1 5 RGPWTAEEDTLLMNHITLHGEGRWNSVARCAGLKRTGKSCRLRWLNYL 52 89********************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	58	101	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T E++l+++++ q+G++ W++Ia++++ gRt++++k++w++ maker-scaffold01649-augustus-gene-0.27-mRNA-1 58 RGNITLKEQLLILELHSQWGNR-WSKIAQYLP-GRTDNEIKNYWRT 101 78999***************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.493	1	56	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-31	2	99	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-15	4	54	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-17	5	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-22	6	59	IPR009057	Homeodomain-like
CDD	cd00167	3.12E-12	7	52	No hit	No description
PROSITE profile	PS51294	18.722	57	107	IPR017930	Myb domain
SMART	SM00717	1.4E-13	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-14	58	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-22	60	106	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-10	62	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0046686	Biological Process	response to cadmium ion
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDIRRGPWTA EEDTLLMNHI TLHGEGRWNS VARCAGLKRT GKSCRLRWLN YLRPDVRRGN 60 ITLKEQLLIL ELHSQWGNRW SKIAQYLPGR TDNEIKNYWR TRVQKQAKQL KCDVNSKQFR 120 DAMRYVWIPR LMERIRATSE SHSDQPTTDC GDPSQQVHAS GSDPIDPYFM PAVSGTPSDS 180 SEQAQISDLT ECYDFSGSNY PNESTNGSGF CPQLGVDIQQ AFGHGGNGWF GGGDTLDSLW 240 NEENLSFLQQ QLCDCDEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-25	2	107	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023917139.1	1e-172	transcription factor MYB108-like
Swissprot	Q10MB4	6e-81	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	A0A2N9JC37	1e-151	A0A2N9JC37_FAGSY; Uncharacterized protein
STRING	EOX95365	1e-104	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47190.1	3e-84	myb domain protein 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]