![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold01636-snap-gene-0.46-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 21056.1 Da PI: 9.9449 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.4 | 1.1e-43 | 10 | 164 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................... 49 +p+GfrFhPtdeelv++yL+ k+eg++ ++ ++i+ev+++k+eP+dL k maker-scaffold01636-snap-gene-0.46-mRNA-1 10 MPVGFRFHPTDEELVSHYLRLKMEGNDSQV-HIIPEVNVCKWEPSDLAKtlrknekeekkkgvfvmkg 76 699************************999.89**************856899*************** PP NAM 50 ...........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkkt 105 +k++++ew+fFs+rd k+++++r+nratksgyWk tgkd++++++ +++++g+kkt maker-scaffold01636-snap-gene-0.46-mRNA-1 77 lalfhdcaefsVIKSDDQEWFFFSPRDFKSSNSNRTNRATKSGYWKVTGKDRKIKARgTNNVIGTKKT 144 *****9999987888999**************************************967778****** PP NAM 106 LvfykgrapkgektdWvmhe 125 Lvf++gr ++g++t+Wvmhe maker-scaffold01636-snap-gene-0.46-mRNA-1 145 LVFHRGRVRDGVRTSWVMHE 164 *******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-44 | 6 | 55 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.336 | 10 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 11 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.09E-44 | 83 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MTSIEGMESM PVGFRFHPTD EELVSHYLRL KMEGNDSQVH IIPEVNVCKW EPSDLAKTLR 60 KNEKEEKKKG VFVMKGLALF HDCAEFSVIK SDDQEWFFFS PRDFKSSNSN RTNRATKSGY 120 WKVTGKDRKI KARGTNNVIG TKKTLVFHRG RVRDGVRTSW VMHECQPTVT LPHQVDGVHV 180 KCS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-33 | 5 | 166 | 10 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023885011.1 | 6e-96 | protein NTM1-like 9 | ||||
Refseq | XP_023894735.1 | 6e-96 | protein NTM1-like 9 | ||||
Swissprot | F4JN35 | 1e-52 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A2N9H8V1 | 2e-69 | A0A2N9H8V1_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0001s45700.1 | 1e-52 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-55 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|