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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold01628-snap-gene-0.30-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
LBD |
Protein Properties |
Length: 240aa MW: 26512.4 Da PI: 9.6049 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold01628-snap-gene-0.30-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 91.5 | 1e-28 | 35 | 136 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvy 63
+C++C+vlr++C++ Cvl+ ++ p++q ++ +++k+FG+s v+ +++a+pe++r+++++sl++
maker-scaffold01628-snap-gene-0.30-mRNA-1 35 SCNGCRVLRKGCSDTCVLRSCLqwiesPKAQGNAVLFLAKFFGRSDVIAFVSAVPETQRPALFQSLLF 102
6******************************************************************* PP
DUF260 64 eAearardPvyGavgvilklqqqleqlkaelall 97
eA+ r+ +Pv G+vg++ +++++++q++++++l+
maker-scaffold01628-snap-gene-0.30-mRNA-1 103 EACGRTVNPVDGSVGLLARGKWHVCQTAVDTVLA 136
***************************9998765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 240 aa
Download sequence Send
to blast |
DYSSSSPSFC IKFCRFDHKR KGKKKNFKSK WVRMSCNGCR VLRKGCSDTC VLRSCLQWIE 60 SPKAQGNAVL FLAKFFGRSD VIAFVSAVPE TQRPALFQSL LFEACGRTVN PVDGSVGLLA 120 RGKWHVCQTA VDTVLAGGTP TPLTEFETHT NGIFHDTTCN PYLPFTAFMQ EAHQPSDPAL 180 TLSLGPKKIT TKPWSGYPRA LKQRMMAENT TSSSFSSEVS EMTSFGSSGN DQKKVLNLFV
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