PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01606-augustus-gene-0.26-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 568aa MW: 61890.5 Da PI: 7.7693 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++v+++G g+W+++ r g+ R++k+c++rw ++l maker-scaffold01606-augustus-gene-0.26-mRNA-1 34 KGPWTAAEDAILVEYVRKHGEGNWNAVQRNSGLARCGKSCRLRWANHL 81 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 87 | 130 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ maker-scaffold01606-augustus-gene-0.26-mRNA-1 87 KGAFTPEEERLILELHAKYGNK-WARMAAQLP-GRTDNEIKNYWNT 130 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.225 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-31 | 32 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-14 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-11 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 26.624 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-17 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 87 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 89 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-12 | 89 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MATNNSTGGV ATSEGGGSST GGAESGLGGA TLKKGPWTAA EDAILVEYVR KHGEGNWNAV 60 QRNSGLARCG KSCRLRWANH LRPNLKKGAF TPEEERLILE LHAKYGNKWA RMAAQLPGRT 120 DNEIKNYWNT RVKRRQRQGL PLYPHDIQPS SQTQNPNQTQ TQTQTQLQLQ HQYQSQSTPT 180 TPTTPTAPTT PTTPTTPTFH FQSHAHHHPS FSLSPTPPPP SNHQHQQHHS FPLSPSKPQQ 240 FTTNTTTSLP LFDPTNNSNT NTNTNTNTNT IPSSFTFHRP PPILGAPIRF KRYRETTGFS 300 LPLSPAPHTT TTTTTTNNNN NNNNNNNNNM ITSPTSITPL GQLSSTQLPD ISCFKFPLTF 360 SHGAPQLIST QLELDQMMSA YSMKQELPSS QLSPHHHPPP PATTMSAITI DTKVSAAAAN 420 PGCGNGLLED LLDEAHALAI SNQGLRTQSF LGVKEEKRVF DGFKHWEGSS TIDCSSGVKP 480 KEEPGVQINT MQEDLSKLLN VIPSTMQIPS DWYSDSGEVS NGQSSGVTDE NIGIDMQHIA 540 SLFPLGATTD HSHRTTGSCS WDNLPGIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 32 | 135 | 5 | 107 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023902343.1 | 0.0 | transcription factor MYB120-like isoform X1 | ||||
TrEMBL | A0A2I4DX23 | 0.0 | A0A2I4DX23_JUGRE; transcription factor MYB86 | ||||
STRING | XP_008385966.1 | 1e-156 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 5e-70 | myb domain protein 101 |