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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold01594-augustus-gene-0.20-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
Trihelix |
Protein Properties |
Length: 444aa MW: 50573.8 Da PI: 6.3688 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold01594-augustus-gene-0.20-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 86 | 4.7e-27 | 84 | 165 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k
maker-scaffold01594-augustus-gene-0.20-mRNA-1 84 WVQDETRSLISLRREMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAK 147
**************************************************************** PP
trihelix 66 egekkrtsessstcpyfdqle 86
+++++ s +++y++++e
maker-scaffold01594-augustus-gene-0.20-mRNA-1 148 HQDRGS---GSAKMSYYKEIE 165
****84...556899***997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 444 aa
Download sequence Send
to blast |
MYLSEKPRPI DLYKEEGARD MMIEVVSNGG GDLGPHHAPQ PHPHAHAHSH HQHQQMILGD 60 SSGGDEDHEV EVEVKAPKKR AETWVQDETR SLISLRREMD GLFNTSKSNK HLWEQISSKM 120 REKGFDRSPT MCTDKWRNLL KEFKKAKHQD RGSGSAKMSY YKEIEEILRD RSKNAQYKSP 180 TPPKVDTYMQ FSDKGTVFEL CFWQNWKNQD ISSTLLGVGI NVFVNPVLVI YGFGVLCSCI 240 EDAGISFGPV EATGRPTLNL ERRLDHDGHP LAITTADAVA ASGVPPWNWR ETPGNGGESQ 300 SYCGRVISVK WGDYTRRIGI DGSTDAIKEA IRCAFRLRTK RAFWLEDEDQ IIRSLDRDMP 360 LGNYMLHLDE GLAIKVCLYD ESDHIPAMHT EDKIFYTEDD YRNFLSQRGW SCLRELDGYR 420 NIDSMDDLRP GAIYRGGAIY RGES
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |