PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01583-snap-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 326aa    MW: 36727.5 Da    PI: 8.6752
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01583-snap-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.4e-32257315360
                                                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                                                D y+WrKYGqK++kgs++prsYY+C+s  +Cp++k+ver+ edp+++++tYeg+Hnh+k
  maker-scaffold01583-snap-gene-0.20-mRNA-1 257 DDYSWRKYGQKPIKGSPHPRSYYKCSSVkSCPARKQVERCLEDPTMLVVTYEGDHNHPK 315
                                                99************************988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.7E-15208253IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-33247315IPR003657WRKY domain
PROSITE profilePS5081129.344250316IPR003657WRKY domain
SuperFamilySSF1182902.88E-27253315IPR003657WRKY domain
SMARTSM007741.5E-37255315IPR003657WRKY domain
PfamPF031064.7E-27257314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKEASSVCVS MTQRWNFKVH EVAQNSFRHA HHLLRCISDQ NHKRSIQEVS LIAQDAENEF  60
RKLLTLLNGS ISSDCRRIKK GPLPNSHDIN PAELMDSPNS SPQDFTCNSN QTCIVRELYP  120
LQSNKSPTAL IQSDNFSLCR HKQNQELQQC YSQTNIVANK SITVQSQFSE HSTSLISMDG  180
SSIDKQTICF SSSETLASPD EYSMLSYKRK CEVKSGDSTT CVVSTGGCHC SKQRKLRMKR  240
AITVPALSNK LADIPPDDYS WRKYGQKPIK GSPHPRSYYK CSSVKSCPAR KQVERCLEDP  300
TMLVVTYEGD HNHPKIAYQA PSLMTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-192513131071WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921503.10.0probable WRKY transcription factor 15
TrEMBLA0A2I4GT421e-139A0A2I4GT42_JUGRE; probable WRKY transcription factor 15
STRINGcassava4.1_032017m1e-129(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-53WRKY DNA-binding protein 21