PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01579-snap-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 565aa    MW: 62170.3 Da    PI: 6.1394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01579-snap-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08452500348
                                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                                +WT  E  +lvd+v + G g+W+ I r        Rt  ++k++w+++l
  maker-scaffold01579-snap-gene-0.33-mRNA-1 452 AWTLVEVMKLVDGVSKCGAGRWSEIKRLAFssySYRTSVDLKDKWRNLL 500
                                                7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.86445504IPR017930Myb domain
SuperFamilySSF466891.39E-15447511IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-11447504IPR009057Homeodomain-like
SMARTSM007171.7E-8449502IPR001005SANT/Myb domain
CDDcd116601.78E-19451501No hitNo description
PfamPF002495.8E-6452500IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
METEVGVEGN DEGKVEETGV EKSSSALSSP KQIADPVVYK LVRVEGDGRL VPATDDELME  60
VEDFLEDDKT EMHDVADSGQ TVGHISDEGA SSEKTQLEST EGLLKLENSE ADAGKLNARP  120
EEIIPSSAPS LNDNDINQSG TTVECPKPQE KTIENVSTSA IPTSSSSKPD FSKLNGEICL  180
DKLSIRELHE VFKATFGRET TVKDKQWLKR RIAMGLTNSC DVSTTTFTIK DNKLVTKGEE  240
ECNKNVDGSF TQDPEVGATD VNNQGSPASH GSQMEDHQTA SGKKLRSHSL ELDSGSEHVH  300
IEQGAAKRIR KPTRRYIEEL SEVESKDYSQ RLITSPKNAV PGQTSPKYSV RPDRNVPSEG  360
RIVVTRLDSL GGSGVQVPYV SRVRRSRPRK NVMALMFFSE VEKDRQRSVM GRFERGENLG  420
LTQADSSGDN SDANVVTVPT AKGGMRRKHH RAWTLVEVMK LVDGVSKCGA GRWSEIKRLA  480
FSSYSYRTSV DLKDKWRNLL KASSAQTPPD DGLNSRKPTS MPIPEHILLR VRELAEMNAQ  540
VPTSISSTKP IMGSRNLHET RSGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383389RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886764.10.0uncharacterized protein LOC111998878 isoform X1
TrEMBLM5WX220.0M5WX22_PRUPE; Uncharacterized protein
STRINGEMJ183470.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-111TRF-like 6