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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold01575-augustus-gene-0.20-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
HSF |
Protein Properties |
Length: 230aa MW: 26692.5 Da PI: 8.4622 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold01575-augustus-gene-0.20-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 108.9 | 3.7e-34 | 21 | 112 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65
Fl k+y ++ed+ ++++isw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv
maker-scaffold01575-augustus-gene-0.20-mRNA-1 21 FLLKTYMLVEDPVTDDVISWNVEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKV 84
9*************************************************************** PP
--SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 66 kdeekkskskekiweFkhksFkkgkkellekikrkks 102
+++ weF ++ F+kg+kell++i+r+k
maker-scaffold01575-augustus-gene-0.20-mRNA-1 85 ATNR---------WEFCNDMFRKGEKELLCEIRRRKA 112
*999.........*********************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MEGMCEKGLL EYVRKSSPPP FLLKTYMLVE DPVTDDVISW NVEGTAFVVW QPAEFARDLL 60 PTLFKHSNFS SFVRQLNTYG FRKVATNRWE FCNDMFRKGE KELLCEIRRR KAWSNKQQPV 120 APTQTSPQEL DEDQRSSSTS SSSGYITLID ENKRLKKENG VLNSELLSMK RKCKELLDLV 180 AKYAHSEKEE EDERPKLFGV RLEVPGEREM KRKRAEIRES ASILLSQSCK
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 6e-21 | 16 | 110 | 15 | 120 | Heat shock factor protein 1 |
5d5u_B | 6e-21 | 16 | 110 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-21 | 16 | 110 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-21 | 16 | 110 | 24 | 129 | Heat shock factor protein 1 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |