PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01556-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 262aa    MW: 29852.7 Da    PI: 8.7227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01556-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-1873124556
                                                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    ++f++eq++ Le +F++++ p  + +++LA++lgL  rqV +WFqNrRa+ k
  maker-scaffold01556-augustus-gene-0.16-mRNA-1  73 QRFNDEQIKLLEIMFKEESRPESRIKQKLANELGLHPRQVATWFQNRRARLK 124
                                                    78************************************************98 PP
2HD-ZIP_I/II1025.2e-3372162393
                                    HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaL 66 
                                                     +r+++eq+klLE +F+ee++ e++ K++la+eLgl+prqva WFqnrRAR ktkq+E++y+ L
  maker-scaffold01556-augustus-gene-0.16-mRNA-1  72 MQRFNDEQIKLLEIMFKEESRPESRIKQKLANELGLHPRQVATWFQNRRARLKTKQIEREYSLL 135
                                                    579************************************************************* PP

                                    HD-ZIP_I/II  67 kraydalkeenerLekeveeLreelke 93 
                                                    k++yd+l+++ e+L++e++ L ++l++
  maker-scaffold01556-augustus-gene-0.16-mRNA-1 136 KASYDTLASNFESLKRENQLLLHQLQK 162
                                                    *********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-1759128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-1762127IPR009057Homeodomain-like
PROSITE profilePS5007117.31366126IPR001356Homeobox domain
SMARTSM003896.4E-1768130IPR001356Homeobox domain
CDDcd000866.86E-1570127No hitNo description
PfamPF000462.8E-1573124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PfamPF021831.8E-15126167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKAERDIPTP LLDKRPNGTA SGMFLSSNSH SYKQSPKSIA ISFITSKCWL KCALVAIESS  60
HTMASKRKNK NMQRFNDEQI KLLEIMFKEE SRPESRIKQK LANELGLHPR QVATWFQNRR  120
ARLKTKQIER EYSLLKASYD TLASNFESLK RENQLLLHQL QKLKNMLDKQ HGKNGKSSDS  180
NSVKGDSTSE SKEKPSILSD SVNHNINMFI GDANCEDAEC TEEETGMLNI AKPIEGSLTS  240
SEDWCSFLDQ SSGNSQWWEL QF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARLKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874761.11e-129homeobox-leucine zipper protein ATHB-12-like
SwissprotP468974e-39ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2N9FZI87e-99A0A2N9FZI8_FAGSY; Uncharacterized protein
STRINGEOY238892e-58(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16057910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-36homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]