 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold01555-augustus-gene-0.23-mRNA-2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 224aa MW: 25210.8 Da PI: 9.0666 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold01555-augustus-gene-0.23-mRNA-2 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.9 | 9.7e-20 | 65 | 119 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k
maker-scaffold01555-augustus-gene-0.23-mRNA-2 65 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 119
78889************************************************98 PP
|
| 2 | HD-ZIP_I/II | 118.6 | 3.4e-38 | 65 | 153 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64
+kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e
maker-scaffold01555-augustus-gene-0.23-mRNA-2 65 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECE 128
69************************************************************** PP
HD-ZIP_I/II 65 aLkraydalkeenerLekeveeLre 89
+Lkr++ +l+e+n+rL++eveeLr+
maker-scaffold01555-augustus-gene-0.23-mRNA-2 129 YLKRWFGSLTEQNRRLQREVEELRA 153
***********************94 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MAVLPSSSSA LELTMSMPGF ASSSSLPSSV RDLDINQVPS IGAEEDWITM NMDDEEESSN 60
GGPPRKKLRL TKEQSRLLEE SFRQNHTLNP KQKEALAMQL KLRPRQVEVW FQNRRARSKL 120
KQTEMECEYL KRWFGSLTEQ NRRLQREVEE LRAMKVGPPT VISPHSCEPL PASTLTMCPR 180
CERVTTTNLE KGPIKTAITT PTTTTMSTKV TTSTLQSRQS PAAC
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 113 | 121 | RRARSKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 8e-43 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
