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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold01555-augustus-gene-0.23-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
HD-ZIP |
Protein Properties |
Length: 234aa MW: 26977 Da PI: 8.5832 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold01555-augustus-gene-0.23-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 69 | 122 | 2 | 55 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55
rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa++
maker-scaffold01555-augustus-gene-0.23-mRNA-1 69 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARH 122
78889***********************************************95 PP
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2 | HD-ZIP_I/II | 109.7 | 2.1e-35 | 69 | 163 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt......ktkq 58
+kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR+ k+kq
maker-scaffold01555-augustus-gene-0.23-mRNA-1 69 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARHcglnrsKLKQ 132
69**************************************************744444449*** PP
HD-ZIP_I/II 59 lEkdyeaLkraydalkeenerLekeveeLre 89
+E+++e+Lkr++ +l+e+n+rL++eveeLr+
maker-scaffold01555-augustus-gene-0.23-mRNA-1 133 TEMECEYLKRWFGSLTEQNRRLQREVEELRA 163
*****************************94 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 234 aa
Download sequence Send
to blast |
LICFGIDHVY AWLCFIFISS FVWGLLFTDH YFAVRDLDIN QVPSIGAEED WITMNMDDEE 60 ESSNGGPPRK KLRLTKEQSR LLEESFRQNH TLNPKQKEAL AMQLKLRPRQ VEVWFQNRRA 120 RHCGLNRSKL KQTEMECEYL KRWFGSLTEQ NRRLQREVEE LRAMKVGPPT VISPHSCEPL 180 PASTLTMCPR CERVTTTNLE KGPIKTAITT PTTTTMSTKV TTSTLQSRQS PAAC
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 8e-43 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |