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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
maker-scaffold01545-augustus-gene-0.17-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
SRS |
| Protein Properties |
Length: 451aa MW: 46649 Da PI: 8.2007 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold01545-augustus-gene-0.17-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 218.7 | 1.3e-67 | 223 | 383 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaas 66
s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++ a+ a +s
maker-scaffold01545-augustus-gene-0.17-mRNA-1 223 SSTTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAGATGVAAGSS 286
57889*********************************************99999988888888 PP
DUF702 67 aaeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrv 120
+++ +k++r +++++++s+t++s+++++++++tss lP +v+++avf+cvrv
maker-scaffold01545-augustus-gene-0.17-mRNA-1 287 GSTSGAKKPRLI-ASQTTTTSHTSTSNTTPPRSFDTSSshqdvsfkeaLPGQVRAPAVFKCVRV 349
899999999975.88899999***************999************************* PP
DUF702 121 ssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++v+dge+e+aYq++v+igGhvfkG+LydqG+e+
maker-scaffold01545-augustus-gene-0.17-mRNA-1 350 TAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVEN 383
*******************************997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
VATTRRLPSD SGAFADWVAS SSSSRAAAPD ELSLGFNAGP TAPGPSSTTG PMWSSGSNTN 60
RPLNYGLATP TPTDMPMVGL RDVFVVATPA SSFHHNLNHH HHHHHHHDQS NMLSDPHSQF 120
NSSNPATALG VGVGVGVIPL LTAAPCATQN LALDDDTSNM FSNRNRSGGG IGGGGIQFWQ 180
NQQQQQQQQH AHYFKKPAIL EHGGGGNLVQ SGGGIGGSNT TSSSTTTCQD CGNQAKKDCT 240
HRRCRTCCKS RGFDCATHVK STWVPAARRR ERQLMAGATG VAAGSSGSTS GAKKPRLIAS 300
QTTTTSHTST SNTTPPRSFD TSSSHQDVSF KEALPGQVRA PAVFKCVRVT AVEDGEDEFA 360
YQAVVKIGGH VFKGFLYDQG VENNSNREGY PNISELHLGG GGGGGGGNSN GGNGGRNGAS 420
SSSPMLDPTD VYAPSGGGGL LGGSSYGNPI N
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 7e-68 | Lateral root primordium (LRP) protein-related |
