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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | maker-scaffold01537-augustus-gene-0.26-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | LBD | ||||||||
| Protein Properties | Length: 128aa MW: 14331.4 Da PI: 8.4967 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 74.3 | 2.4e-23 | 12 | 60 | 1 | 49 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49
+CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++
maker-scaffold01537-augustus-gene-0.26-mRNA-1 12 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQQQ 60
7*********************************************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 15.444 | 11 | 119 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 4.8E-23 | 12 | 63 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 128 aa Download sequence Send to blast |
MKESRKQGAM SPCAACKLLR RRCAQDCVFA PYFPADEPQK FANVHKVFGA SNVNKMLQQQ 60 VDILQTQLAI AQAEVVHMRM RQYPSSSNNP PDNNDSPSPK LMSSQTKSFF SMDMVVDQAN 120 LGESLWSC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 9e-24 | 8 | 59 | 7 | 58 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 9e-24 | 8 | 59 | 7 | 58 | LOB family transfactor Ramosa2.1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023927390.1 | 5e-84 | LOB domain-containing protein 4-like | ||||
| Swissprot | Q9SHE9 | 4e-41 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
| TrEMBL | A0A1U8B423 | 1e-59 | A0A1U8B423_NELNU; LOB domain-containing protein 4 | ||||
| STRING | XP_010274089.1 | 2e-60 | (Nelumbo nucifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF1334 | 34 | 105 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G31320.1 | 6e-43 | LOB domain-containing protein 4 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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