PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold01533-snap-gene-0.33-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36576.1 Da PI: 7.7924 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++ +G g W+ +++ g++R++k+c++rw++yl maker-scaffold01533-snap-gene-0.33-mRNA-1 15 RGAWTALEDKILSAYIRAHGEGKWRYLPKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.8e-14 | 68 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ maker-scaffold01533-snap-gene-0.33-mRNA-1 68 RGNISHDEEELIIRLHNLLGNRlfllrlfyldpnkliqfwEWSLIAGRLP-GRTDNEIKNYWNTT 131 78999*********************************************.************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.699 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.83E-21 | 13 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-7 | 17 | 62 | No hit | No description |
SMART | SM00717 | 1.4E-7 | 67 | 134 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.737 | 67 | 136 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-11 | 68 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 70 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.37E-7 | 72 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MGRSPCCSKQ EGLNRGAWTA LEDKILSAYI RAHGEGKWRY LPKRAGLKRC GKSCRLRWLN 60 YLRPDIKRGN ISHDEEELII RLHNLLGNRL FLLRLFYLDP NKLIQFWEWS LIAGRLPGRT 120 DNEIKNYWNT TLGKKAKAQT SSPLAEQSPM SKSQDKKLAT KPNSTAAEPS NLAQASATPT 180 QVIRTKASRC TKVLIPALPS LNEYHSLNST AIDPLEPQAL QSQLQSYHQD SAKRDVRGGT 240 EELHETCGQE SDFFNFSSNE FQASHGDRNG DYNFNNMQGP VQSLPFDETM FKDWTTNYCL 300 EDNFNLDIES LTFLLDSDEW P |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-19 | 13 | 136 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899958.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | P10290 | 4e-57 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A2N9ET87 | 1e-169 | A0A2N9ET87_FAGSY; Uncharacterized protein | ||||
STRING | EOY30027 | 1e-122 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16720.1 | 1e-49 | myb domain protein 7 |