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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01520-snap-gene-0.25-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WOX | ||||||||
Protein Properties | Length: 253aa MW: 27768 Da PI: 5.3115 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.9 | 1.1e-15 | 23 | 83 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ maker-scaffold01520-snap-gene-0.25-mRNA-1 23 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 83 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.4 | 8.3e-35 | 22 | 85 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q maker-scaffold01520-snap-gene-0.25-mRNA-1 22 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 85 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-14 | 16 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.418 | 19 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-8 | 21 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.6E-7 | 21 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-13 | 23 | 83 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEDQQGQEAN SPSQGSERNE PVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE 60 KFGSVGDANV FYWFQNRRSR SRRRQRQMQA NLEQRNQAQA QPQLVVTSTC GATQLFESSS 120 GFSFGPLSSP SYHLGSSSSS CGVMGNDVAV DQCLFSVSGQ MGFPEIEQSS AVTPGLCASD 180 TSNLQYQSGF ITVFINGVLT EVPRGPLDMK AMFGQDVVLV HSSGVPVPIN EFGFLIQGLQ 240 HGESYFLVNT STN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023880720.1 | 0.0 | WUSCHEL-related homeobox 11-like isoform X1 | ||||
Swissprot | Q6X7J3 | 3e-74 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A2I4FNZ4 | 1e-126 | A0A2I4FNZ4_JUGRE; WUSCHEL-related homeobox 11-like isoform X3 | ||||
STRING | EOY10442 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 5e-36 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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