PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01463-snap-gene-0.38-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 337aa MW: 37253 Da PI: 10.0587 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.6 | 1.9e-31 | 266 | 323 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ maker-scaffold01463-snap-gene-0.38-mRNA-1 266 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHS 323 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.3E-17 | 216 | 262 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-33 | 252 | 323 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.928 | 259 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-27 | 261 | 323 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-38 | 264 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-27 | 266 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAVEFMMDYR NNNFSAKMEE NAVQEAASGL ESVEKLIRLL SQSQQQQQQQ QQQQQYQSQS 60 QNQSSSEMER DCKAVADVAV SKFKKVISLL GRTRTGHARF RRAPLAPPPP LVSNQSQERS 120 APEPRVYHAT PIQQIPPLPQ YHGESFMPKN GVIERRDSST TTINFSYSSA ATSFMSSLTG 180 DTDSKQQPSS SSAFQITNLS QVSSVGKPPL STASLKRKCS SENLGSGKCG GSSGRCHCSK 240 KSRKLRLKRV VRVPAISLKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK 300 HVERALDDPA MLVVTYEGEH NHSLSVAEAS NLILESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 252 | 324 | 2 | 73 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB610100 | 0.0 | AB610100.1 Castanea crenata mRNA, microsatellite: PEB107, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023918500.1 | 0.0 | probable WRKY transcription factor 7 isoform X1 | ||||
Swissprot | Q9STX0 | 3e-95 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A2N9FE90 | 0.0 | A0A2N9FE90_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0007s10670.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 1e-66 | WRKY DNA-binding protein 7 |