PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01450-snap-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 274aa    MW: 30480.1 Da    PI: 5.0011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01450-snap-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-191968255
                                        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                               +y GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  maker-scaffold01450-snap-gene-0.31-mRNA-1 19 QYIGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 68
                                               799******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-311875No hitNo description
PfamPF008472.3E-141968IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-201976IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-281975IPR001471AP2/ERF domain
PROSITE profilePS5103219.731976IPR001471AP2/ERF domain
SMARTSM003801.9E-331982IPR001471AP2/ERF domain
PRINTSPR003672.1E-82031IPR001471AP2/ERF domain
PRINTSPR003672.1E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEQSATLAAP GGARMNRKQY IGVRQRPSGR WVAEIKDTIQ KIRVWLGTYD TAEEAARAYD  60
EAACLLRGAN TRTNFYPCSP THLRPALPSK ITNLLLLRLQ ARHIASASIA ATSLPISLQE  120
PETESQGGGK EEVGEKEGCD MEHIDFQFLD AVVSTCYCSP FEIAEEMVEP VEQETYGNEP  180
SLLGETMKRM KCERKFSASL YAFNGIPECL RLKQSEVANG PERSEQLSNL GSNCNSDEDR  240
KHREDIFWEV VKEQIGISHA STERGSSSSS SSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1419751471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894274.11e-136ethylene-responsive transcription factor 11-like
TrEMBLA0A2N9J3W61e-124A0A2N9J3W6_FAGSY; Uncharacterized protein
STRINGGorai.008G178900.11e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-21related to AP2 11