PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01436-augustus-gene-0.28-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bHLH | ||||||||
Protein Properties | Length: 744aa MW: 79798.8 Da PI: 6.4637 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.6 | 3.4e-16 | 478 | 524 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq maker-scaffold01436-augustus-gene-0.28-mRNA-1 478 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 524 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.68E-17 | 470 | 528 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-20 | 471 | 536 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-20 | 471 | 532 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 474 | 523 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 478 | 524 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 480 | 529 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MPLSELYRMA KGKLESTREK NTACSNDLSF LPENDLFELV WENGQILKQG QSSRARKSPT 60 RNSFQSHCLP SYTSKIRDKD IGNGSNSKMG KFGGMESVLN EIPMSVPSDE IDLSQDDDIM 120 PWLNYPIDDS LQHEYCSELL PELSGVTVNE LSNQNNLASI DKRSSCNLVY RDCHTNSVND 180 VVSLGQGNVS KVSSVVIGEA TRPRTTPLYP SSSQQCQTSF SSLRSRITDG AGNNTSSVMH 240 RAVCGDSTQV ASAAGVFPTI KMQKKDQMSS NNNSNLMNFS HFSRPAALVK ANLQNMGLMV 300 GSDLSSMERI TSKDKGSAAS IKHPPESTHI NSISGLQKES SSHCQPLAAP APSKVDLKPS 360 EDKPVEETVA SKQSEAVCPD EASRNDKISN QVFSESVTKG LPDAEKTTEP VVASSSACSG 420 NSVERASDDP THNLKRKFRD TEESEYHSED IEEESIGAKK AAPGRAGTGS KRSRAAEVHN 480 LSERRRRDRI NEKMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQIM SMGAGFYMPP 540 MMLPTGMQHM SAPHMAHFSP MGVGMGMGMG MGYGMGMPDM NVGPSGYPMI QVPPMQGAHF 600 PGPPISGHTA MHGMAGSNLQ MFGLPGQGLP MPMPMPRAPL IPLSGGPIMK SATGLNACGV 660 VGPVENVDSA PASSSKDPMQ NVNSQAMQIT GASISMTQTS SQCPATNARF EPSSLVQNNG 720 QVSDVGNTAV NSANGNDLVP SKPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 482 | 487 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023888905.1 | 0.0 | transcription factor PIF3-like isoform X2 | ||||
TrEMBL | A0A2I4HK49 | 0.0 | A0A2I4HK49_JUGRE; transcription factor PIF3-like isoform X1 | ||||
STRING | EMJ08410 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 9e-50 | phytochrome interacting factor 3 |