PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold01427-augustus-gene-0.23-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 382aa MW: 43049 Da PI: 7.4976

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01427-augustus-gene-0.23-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.8	1.8e-11	63	86	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtp+LH rF++ave+LGG++ maker-scaffold01427-augustus-gene-0.23-mRNA-1 63 PRLRWTPDLHLRFIHAVERLGGQD 86 8*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-10	59	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEESGGSECS KMSPSNPNED GSESGENDDD YKPKNGGSSS NSTVEESEKK SSSVRPYVRS 60 KMPRLRWTPD LHLRFIHAVE RLGGQDSESY TKDGSSAYEH QRTKYCSCQE PFTGNLTSRT 120 KMFRSKKVDD PGQVLADHRH LVESGDRNIY NLSQLPMLQG YNPSHNSNFR YGHGDSSWSK 180 AYENLMMSCR GRSSTNNYGA GFYGTVSEKI FGSNYNSWTN CNFHRRASTF GEQSGWRTHE 240 LKDGFQSFHH NHESLHNQPR LTPIDLNPVT HLKAEVLLQE HTSSSNSNVP SEFNKTSILQ 300 EWKTLKRKAS DCNLDLDLSL RLTSSRNDDN HRRSLMDHKV DHSNLSLSLY SQSSSSLTSL 360 KDGRVDGNKE QAKGASTLDL TI

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEESGGSECS KMSPSNPNED GSESGENDDD YKPKNGGSSS NSTVEESEKK SSSVRPYVRS  60
KMPRLRWTPD LHLRFIHAVE RLGGQDSESY TKDGSSAYEH QRTKYCSCQE PFTGNLTSRT  120
KMFRSKKVDD PGQVLADHRH LVESGDRNIY NLSQLPMLQG YNPSHNSNFR YGHGDSSWSK  180
AYENLMMSCR GRSSTNNYGA GFYGTVSEKI FGSNYNSWTN CNFHRRASTF GEQSGWRTHE  240
LKDGFQSFHH NHESLHNQPR LTPIDLNPVT HLKAEVLLQE HTSSSNSNVP SEFNKTSILQ  300
EWKTLKRKAS DCNLDLDLSL RLTSSRNDDN HRRSLMDHKV DHSNLSLSLY SQSSSSLTSL  360
KDGRVDGNKE QAKGASTLDL TI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023922488.1	0.0	uncharacterized protein LOC112033940
TrEMBL	A0A2N9FI59	1e-178	A0A2N9FI59_FAGSY; Uncharacterized protein
STRING	EOY07117	1e-102	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-37	G2-like family protein