PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01422-augustus-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARF
Protein Properties Length: 1042aa    MW: 114825 Da    PI: 6.4415
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01422-augustus-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.8e-112783225399
                                                    EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                             B3  53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                    r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  maker-scaffold01422-augustus-gene-0.22-mRNA-1 278 RGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 322
                                                    778888*************************..8899999****997 PP
2Auxin_resp119.23.3e-39347430183
                                     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtv 63 
                                                    aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt+
  maker-scaffold01422-augustus-gene-0.22-mRNA-1 347 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTI 410
                                                    79*********************************9789************************* PP

                                     Auxin_resp  64 vgvsdldpvrWpnSkWrsLk 83 
                                                    +g+sdldpvrW+ S+Wrs+k
  maker-scaffold01422-augustus-gene-0.22-mRNA-1 411 TGISDLDPVRWQSSHWRSVK 430
                                                    *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-31115197IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-20123189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-8129189No hitNo description
SMARTSM010190.0023130223IPR003340B3 DNA binding domain
SMARTSM010190.19232323IPR003340B3 DNA binding domain
PROSITE profilePS508639.601270323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-15276336IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-8276322IPR003340B3 DNA binding domain
SuperFamilySSF1019368.5E-13278350IPR015300DNA-binding pseudobarrel domain
PfamPF065075.9E-34347430IPR010525Auxin response factor
SuperFamilySSF542773.66E-8854939No hitNo description
PROSITE profilePS5174526.092860945IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MRLSSSSAAF SQHSQEGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PNLPPQLICQ LHNVTMHADV ETDEVYAQMT LQPLSPQEQK DVYLLPAELG  120
TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPAQEL IARDLHDNEW  180
KFRHIFRGSV ITGKGGGLYI EGLMGCEGEG CDGGAELGGI GGGVTKGGTV DNQKMGMEVF  240
LMTPPQATVE PIPTTTNWPI CNISCWDCWW MTSVKGKRGQ PKRHLLTTGW SVFVSAKRLV  300
AGDSVLFIWN EKNQLLLGIR RANRPQTVLP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF  360
YNPRASPSEF VIPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGISDLDPVR  420
WQSSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP STFPLRLKRP WPSGLPSFHG  480
LKDGDISISS PLMWLQGGLG DQGIQSLNFQ GFGVTPWMQS RFDLSISGPQ PDVYQAMAAA  540
ALQEMRTVDP SKCSSQSLLQ LHQSQNVSNG PNLIQRQMLQ QPQSQNSFLQ SLQENQLPTQ  600
AQLLQQQLQH YQPYNNQRQQ QQQQQQLQQS QQLHHLSVQQ QIPNVISAIS NFASATQSQT  660
PSLQSIPSQC QQQCFPDPVG NPLSTSDVSP IHSVLGSLSQ DGASYLHNLN GSNPAIASSS  720
MLPKQIAVEP QLPSGAAQCG LPQVEQLGTT QSNVSELSIL PPFPGREYSG YQGATDPQTN  780
LLFGVNIDSS SLMLQNGMAN LRDIGSESDS LSMPFSTSNF TSATGTDFPL NSDITTSSCV  840
DESGFLQSSD NVDQVNPPTR TFVKVHKSGS FGRSLDISKF SSYDELRSEL AHMFGLEGQL  900
EDPQRSGWQL VFVDRENDVL LLGDDPWQKA MTVLKENNVL WVIEIFAFTT CGSQVMDKEG  960
VGINEESELG EQNPAGFRLR CPSFSKAYEH GELNDVRRPC WIGSSLIVEV DVRGRRRVSW  1020
GSRNRGGQKL KWVSRAGKVL SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-741545143388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895025.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2P5XI150.0A0A2P5XI15_GOSBA; Auxin response factor
STRINGXP_010106165.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-154auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]