 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold01420-snap-gene-0.35-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
WOX |
| Protein Properties |
Length: 248aa MW: 27632 Da PI: 5.3539 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold01420-snap-gene-0.35-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 41.9 | 1.7e-13 | 3 | 46 | 19 | 57 |
HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+++ r psae++++++++l +++ ++V++WFqN++a+e++
maker-scaffold01420-snap-gene-0.35-mRNA-1 3 YNNgVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 46
5555899***********************************97 PP
|
| 2 | Wus_type_Homeobox | 82.6 | 4.9e-27 | 3 | 48 | 20 | 65 |
Wus_type_Homeobox 20 yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
y++G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
maker-scaffold01420-snap-gene-0.35-mRNA-1 3 YNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 48
89******************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
LYYNNGVRSP SAEQIQRISA RLRQYGKIEG KNVFYWFQNH KARERQKKRL NSDVPMQRGV 60
GVGNTNWNNT PEESIHTKYP LPNITSGVSA SSSSSGVISV GHMGNYGYGS VIMEKSFRDC 120
SISNGGNNGG VGGSIGHNFG CVGADPYSSS YSTLFDKRRL MEENLGVQED EDEEEEEEEE 180
EAGEKETLPL FPMHAEDING FCNMNPYTTN NGYNYTSCYR SADDGINGSR TSLELSLNSY 240
SHRSSHYH
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM447418 | 3e-58 | AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence. |
