PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01338-snap-gene-0.46-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 320aa    MW: 35233.6 Da    PI: 5.9107
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01338-snap-gene-0.46-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28145205259
                                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                                +Dg++WrKYGqKe+ gs++pr+Y+rCt++   +Cp+kk v+r ++dp ++e+tY+g+H+++
  maker-scaffold01338-snap-gene-0.46-mRNA-1 145 EDGFTWRKYGQKEILGSKHPRGYFRCTHQklyQCPAKKLVQRLDDDPYMFEVTYRGSHTCH 205
                                                7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-27140206IPR003657WRKY domain
SuperFamilySSF1182902.48E-25142206IPR003657WRKY domain
SMARTSM007744.9E-37144206IPR003657WRKY domain
PfamPF031063.6E-26145205IPR003657WRKY domain
PROSITE profilePS5081119.956145207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEETNPISII RQGCKLAREF EAKLPNLTDQ HNMLLTSCDE IIKVFDTAKE RLCTTQFQDP  60
LSHTPMNMLI RQAQESQQTQ IEAAADLQGW LRSSYTQAMD IFQLQLQADQ SRNPFGTQKL  120
GRDDGERRTL TVPVPRIGNT EIPPEDGFTW RKYGQKEILG SKHPRGYFRC THQKLYQCPA  180
KKLVQRLDDD PYMFEVTYRG SHTCHMSSTA PSIPPPPDQI SHDIAQFIAS QPLPSSTVPL  240
GSWLSMDSLG GGSGMAIGGG GSGSGSGAGP STARSGKEVE FPVADMADVM FNSGSSSSNS  300
MDFLFQAPED VKWKPGDKQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20145204968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894701.10.0LOW QUALITY PROTEIN: WRKY transcription factor 55
TrEMBLA0A2N9EUQ71e-127A0A2N9EUQ7_FAGSY; Uncharacterized protein
STRINGPOPTR_0013s09460.16e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-52WRKY DNA-binding protein 55